Launching the IMS-SRM application

The IMS-SRM software can be launched from the Windows Start menu or from a desktop icon (Figure 1).

Figure 1- SRM Desktop Icon

At launch, the program begins the following initialization process:

Tests all instrument communications
Reloads configuration values
Homes the tray in the track
Sets the degauss controller to a known state

After successful initialization, the main IMS-SRM window will appear (Figure 2).

Figure 2- SRM IMS Main Window

A Quick Introduction to the IMS Program Structure

IMS is a modular program. Individual modules are as follows:

INST plug-in: code for each of the instruments
MOTION plug-in: code for the motion control system
DAQ Engine: code that organizes INST and MOTION plug-ins into a track system

The SRM system, specifically, is built with one INST module (SRM), one MOTION module, and one DAQ Engine module.

The IMS Main User Interface (IMS-UI) calls these modules, instructs them to initialize, and provides a user interface to their functionality.

Each module manages a configuration file that opens the IMS program at the same state it was when previously closed and provides utilities for the user to edit or modify the configuration data and calibration routines.

The four buttons on the IMS-UI window provide access to utilities/editors via dropdown menus as shown in Figure 3.

Figure 3- IMS Control Panel Drop Down Menus

Initial Instrument Setup

SRM Configuration

Configuration values should be set during initial setup and configuration by the paleomagnetics technician or scientist(s). There should be no need to change these values unless the configuration file is corrupted.

SRM Instrument General Setup

To open the SRM instrument setup window (Figure 4), select Instruments > SRM: Setup from the IMS panel menu (Figure 3).

1) Ensure the values in the window are set as shown in Figure 4.

The SQUID constant values are provided by 2G and should not be altered.
The response lengths values were determined through extensive testing and should not be altered without prior approval.
Once the offset to the SQUIDS is determined, this value should not change unless the track hardware is altered.
The text fields are character limited and "Super Conducting Rock Magnetism" for the "Full Name" field exceeds this and will be truncated but causes no known issues.

2) Click OK to save the changes and write them to the configuration file. Click Cancel to revert to previous values.

Figure 4- SRM Parameters Window

Degauss and Drift Locations Track Setup

This window is used set the distance to the drift measurement locations and the degauss staging positions. To open the Degauss and Drift setup window (Figure 5), select DAQ > Degauss-Drift Locations from the IMS panel menu (Figure 3).

1) Ensure the values in the window are set as shown in Figure 5.

These values should never change unless the hardware is replaced or the configuration file is corrupted.
These positions will ensure that a 160-cm section is outside of the SQUIDS during zeroing and outside of the degauss region while ramping the coils up and down.

Figure 5- Degauss and Drift Position Configuration Window

Defining Section Half and Discrete Tray Setups

At the beginning of an expedition, or any time the tray is replaced, the scientist(s) or technician must define the two active tray definitions. The program will have in memory the values for just one section half tray and one discrete tray at a time. To open either the Section Tray or Discrete Tray editors, select DAQ > Tray Section Editor or DAQ > Tray Discrete Editor from the IMS panel menu (Figure 3).

For section trays, define the distance from the home switch (edge of tray that strikes the home switch) to the location of the top of core (top offset). Set the total tray length (Figure 6).
For discrete trays, define the discrete centers (offset from the tray’s edge that strikes the home switch to the center of the position in which the specimens are placed). Set the total tray length (Figure 7). When measuring the background of the discrete tray, only these specific locations will be measured. The user will select which positions are actually used later during sample entry. To remove a discrete center, right click on the position and select Delete element.

Making changes to the tray settings will invalidate the background measurement. The user will be given a warning when they try to start a measurement. A new background will be needed before a measurement can be completed.

Figure 6- Section Tray Editor Window

Figure 7- Discrete Tray Editor Window

Figure 8- Warning window when current tray settings and

last background measurement do not match

Setting Up for a Measurement

Prior to measuring section halves or discrete samples in the SRM the user must:

Set the measurement interval
Take a background measurement of the empty tray
Create or select a measurement sequence
Create or select a sample type preset

Setting the Measurement Parameters

To open the Measurement Editor (Figure 9), select DAQ > Measurement Editor from the IMS panel menu (Figure 3).

This window allows the user to view and adjust the SRM DAQ Parameters. The current settings are shown in the bottom left hand corner of the window.

Interval: Interval in cm between measurements. This is only valid for SECTION HALF measurements. The measurement interval can range from 0.1 to 20 cm. The most common measurement intervals used are 2.5 cm, 5 cm, and 10 cm.
Average: The number of measurements to take at each position. The measurements will be averaged and the mean will be written to the data files.
Leader/Trailer Length: The distance in cm that is measured before and after the section. This is used in deconvolution processing.

Measurement Speed: User selects slow or fast speed, which determines the settling time and data filter. Slow speed reduces noise while fast speed completes measurements more quickly. Slow speed is recommended.

FLUX Alarm Threshold: The flux count value above which the SRM program will trigger a Flux Jump Alarm. Flux counts between the positive and negative threshold value will not trigger the alarm.

Figure 9- Measurement Editor Window

The SRM software is designed to check if the current measurement interval matches the current background tray measurement interval. If the intervals differ, the user must complete a new background measurement. The software will not allow the user to begin a measurement if the values differ. If a change is made, the user may see a red indicator next to DAQ Valid, indicating a new background measurement is necessary (Figure 10).

Figure 10- DAQ Invalid Warning in Measurement Editor Window

Click ACCEPT to exit the Measurement Editor Window once the parameters are set. Select Revert to return to the previous values or select Cancel to leave the window without saving any changes.

Measuring Tray Backgrounds

To measure the background of a section or discrete tray:

1) Select Instruments > SRM: Section Background or Instruments > SRM: Discrete Background (depending on the tray type used)(Figure 11) from the IMS panel menu (Figure 3).

The default action for the tray background measurement is to demagnetize the tray and then to measure the empty tray.
The user may adjust the demagnetization level (maximum of 80 mT) or choose to measure without demagnetizing the tray. The demagnetization level setting box will be disabled when the user has selected a background only (no demagnetization) measurement.

Figure 11- Section Tray and Discrete Tray Background Windows

2) Click START to begin the background measurement process.

3) When the process is complete the user will be prompted to ACCEPT and save background data (Figure 12). If the background data looks suspect (high values or peaks), select CANCEL.

If the data are saved, a new background tray file will be written. The most recent tray measured for each type (section or discrete) will be kept in memory.

These background data will be applied to all subsequent measurements of the same type.

Figure 12- Background Confirmation Window

Creating a Measurement Sequence

1) Open the Sequence Editor (Figure 13) by selecting DAQ > Sequence Editor from the IMS panel menu (Figure 3).

Figure 13- Sequence Editor Window

2) Select a sequence action on the left side of the window. In-line and off-line treatments are mutually exclusive. Once a treatment type is selected, the other treatment type will be disabled.

Measure only should be used to make an NRM measurement.
In-line AF Demag allows users to assign a degaussing step with a field ranging from 1 to 80 mT.
Off-line Treatment will place an “off-line treatment” into the sequence list. Accept the sequence. A dialog box will be triggered (Figure 14) during the measurement process prompting the user to perform an offline treatment. The user may enter the type of offline treatment and comments regarding the treatment. The types of treatments available are shown in Figure 14. Click Continue Sequence to continue with the measurement and Abort to end the sequence.

Figure 14- Offline Treatment Window

3) Users may copy an existing sequence from a file by clicking the Copy From File button.

A new window with a list of existing sequences will be displayed (Figure 15).
Select an existing sequence and press the Copy button.
Once selected, a sequence will be displayed in the sequence action list and the user may edit the sequence (Figure 13).

Figure 15- Copy Sequence File Window

4) Click Add to List to place a new step into the sequence action list.

In-line AF Demag steps will be automatically ordered by increasing value.
Each in-line AF Demag step automatically has a measurement step.

5) Once the list is completed, click Ok Save and name the sequence

The sequence will be saved with a new name or the user may save over an existing sequence.

Defining the Sample Presets

The data calculations for the SRM are volume dependent and therefore it is necessary to assign the appropriate shape and volume to the sample prior to measurements. In the sample preset editor window the user can set the sample shape, section half, and the orientation of the sample. The volume used for each shape is displayed, and in some cases, may be edited.

Create Sample Presets

1) To open the Sample Preset Editor (Figure 16), select DAQ > Sample Preset Editor from the IMS panel menu (Figure 3).

2) Select a sample shape from the left hand column.

Section Half-Piston and Discrete J-cube are the most commonly used presets.

3) Note the volume or area values.

The Section Half-Piston, Section Half-Rotary, Discrete IODP, Discrete J-Cube, and U-channel sample shapes have fixed volumes.
For all other sample shapes the user may edit the actual volume/area value. Only one value may be assigned to a shape. Always check the volume/area value.
For Section Halves, Select Section Half-Piston or Section Half-Rotary (Figure 16):

Verify the area. Piston cores should be 17.50 cm² and Rotary cores should be 13.40 cm².

4) Select the section half at the bottom of the window. In most cases this should be ARCHIVE for section halves.

Figure 16- Sample Preset Editor Window: Section Half View

5) For Discrete Specimens, Select a Discrete Cube shape and orientation (Figure 17).

Shapes include: Discrete IODP-Cube, Discrete J-Cube, Discrete Mini Core, and Discrete Other.
Orientation includes Face Orientation and Arrow Orientation:
Face Orientation refers to which direction the face of the cube with the arrow is facing relative to the SRM (i.e., Top means the arrow is on the top of the cube, left means that the arrow is on the left side of the cube when looking toward the SRM).
Arrow Orientation refers to the direction the arrow is facing (i.e., Into means the arrow is pointing into the SRM, Right means the arrow is pointing to the right when looking toward the SRM).

The arrow in the diagrams indicates the arrow or hatch mark placed on the split face of the core section during sampling. The arrow points to the top of the core.

There are 24 possible cube positions. During Expedition 318 it was determined that three positions were sufficient for measuring discrete cubes. These three orientations were: Top-Into, Top-Right, and Away-Up.

6) Select the face orientation and arrow orientation that the cube will be placed in the tray. Orientations are relative to the SRM when the user is looking from the load zone toward the SQUIDS.

Place the cube into the tray so that the cube arrow matches the preset display.

7) Select the section half at the bottom of the window. In most cases this should be WORKING for discrete samples.

Figure 17- Sample Preset Editor: Discrete Sample View

Save the Sample Preset

1) Check the white square box on the right side of the screen (Figure 16 and Figure 17).

2) Click on one of the six sample preset buttons and a window will appear (Figure 18).

Figure 18- Edit Preset Window. Name a new preset, update an existing preset, or disable a preset button.

3) Enter a name for the button in the NAME field.

Include the orientation in the name (i.e., Archive, Working, Top-Away, etc.).
For section halves, include the type of core (i.e., Rotary or Piston).

4) Select UPDATE BUTTON to save the preset.

Disable Button will clear any preset already saved to this button.
Cancel edit will close the edit preset button name window without making any changes.

5) The preset name should be visible on the right hand side of the page. Figure 17 has two presets assigned: Archive_SHLF_Piston and Archive_SHLF-Rotary.

To review what has been assigned to a preset button, click the preset button once. The screen image will update to show the current preset.

To clear a preset

1) From a single button:

Open the button as if to name a preset.
Select Disable Button.

2) For all six buttons:

Select the Clear All Presets button.
User will be asked to confirm the deletion (Figure 19).

Figure 19- Clear Presets Confirmation Window

3) Select OK to exit the preset editor

Starting Measurements

Sample Information Window

Click START on the IMS panel (Figure 2) to open the sample information window (Figure 20–Figure 26). This is where the user enters the sample ID for a section or discrete sample and initiates the measurement.

There are four available tabs on the sample information screen. The first 3 tabs allow the user to enter sample identification information using 3 different methods. The fourth tab allows the user to select a measurement sequence.

Sample Entry Tabs

Scanner: Scan the IODP barcode to enter the sample’s Text ID and Label ID values.
LIMS: Select expedition, site, hole, core, and section values from a series of list boxes that are populated with data from the LIMS database.
Manual: Manually enter the sample’s Text ID and Label ID values and a length. The name fields will accept any name, so the user must be careful to enter the name properly. If the name is incorrect a file will be created, but it may not upload properly.

Measurement Sequence Tab

The user can select a premade measurement sequence in the Measurement Sequence tab (Figure 20). The last used measurement sequence will remain in memory and is displayed at the bottom of the sample information window. If the sequence displayed is correct, the user does not need to utilize the measurement sequence tab.

Figure 20- Sample Information Window: Measurement Sequence Selection

The user can select a premade measurement sequence in the Measurement Sequence tab (Figure 20). The last used measurement sequence will remain in memory and is displayed at the bottom of the sample information window. If the sequence displayed is correct, the user does not need to utilize the measurement sequence tab.

Click on sequence name in the Measurement Sequence Files list to start a sequence with the first step.
To begin at a specific step within a sequence, click on a step in the sequence action list and highlight it blue. Be careful! If a demagnetization step is highlighted blue in the sequence action list, the demagnetization process will start once the MEASURE button is pressed. As of November 2018 this feature does not work.

Figure 21- Sample Information Window: Section Half Scanner Sample Entry

Section Half Sample Entry

1) Select START on the IMS panel (Figure 2) to open the sample information window (Figure 21).

2) Select a measurement sequence in the Measurement Sequence tab (Figure 20). The sequence may already be selected and displayed in the lower portion of the window.

3) Select the appropriate sample type and orientation preset on the left side of the screen.

4) Enter the Sample ID Information

Scanner mode: Place cursor in the scan box; scan the section half label from the end cap (Figure 21).
LIMS mode: Select a section using the hierarchy columns (Figure 22). Only the sections/cores that match your preset will display (e.g., if you select an archive half section preset, only archive half sections will be displayed).
Manual entry mode: Type in the sample label ID (i.e., 362-U1480A-1H-1-A) and LIMS Text ID (i.e., SHLF7851761) and length of section (Figure 23).
- Any entry will be accepted, but that does not guarantee the data will upload. The Text ID information must match an actual section in order for the data to upload.
- Select USE ME to update the IDs and enable the MEASURE button.

5) Check that the displayed length of the section matches the section length.

To override the section length, first scan the label on the Scan tab and then select the Manual tab. The Sample ID and Text ID values will be copied. Enter the length in the USER Length numeric control and then click the USE ME button.

6) Click MEASURE.

Figure 22- Sample Information Window: Section Half

Figure 23- Sample Information Window: Section Half Manual Entry

Discrete Sample Entry

1) Click START on the IMS Control Window (Figure 2) to open the sample information window (Figure 21).

2) Select the appropriate discrete sample type and orientation preset on the left side of the screen.

3) Select a measurement sequence in the Measurement Sequence tab (Figure 20).

4) Enter the Sample ID Information:

Scanner mode: Place cursor in the scan box and scan the discrete cube label (Figure 24). The sample will be immediately assigned to the tray position highlighted on the right side of the screen.
LIMS mode: Use the hierarchy selection columns to select a discrete sample (Figure 25). You must select a sample from the Discrete Sample list box before you can assign it to a tray position. Double click on the Tray Position list to assign it to a tray position.
- Samples can be listed by core or section and filtered by sample type and/or code. See the special features: LIMS Filter Section of this guide for further information.
- Remember that only samples that match the preset’s sample source (Archive or Working) will be displayed. For example, if you select an archive preset then any samples from the working half will not be displayed.
Manual entry mode: Type in the sample label ID (i.e., 362-U1480B-1H-2-W 117/119-PMAG) and LIMS Text ID (i.e., CUBE7990351) (Figure 26). Anything will be accepted, but that does not guarantee the data will upload. The ID information must match an actual sample in order for the data to upload.
- Click the USE ME button to use the ID information. Double click on a Tray Position to assign the ID information to that tray position.
- The Sample ID and LIMS ID should be displayed below the manual entry tab as seen in Figure 26.

5) Click MEASURE to begin measuring the discrete samples

Figure 24- Sample Information Window: Discrete Scanner Entry

Figure 25- Sample Information Window: Discrete LIMS Entry

Figure 26- Sample Information Window: Discrete Manual Entry

Offline treatment

The SRM aboard the JR is limited to AF demagnetization up to 80 mT. However, due to a coil overheating incident, it is strongly recommended not to use a field higher than 50 mT. In some instances, scientists may need to conduct analyses on discrete samples which require a field higher than 50 mT, ARM or IRM. Field higher than 50 mT and up to 200 mT can be applied with the D-Tech degausser in the lab (DTech AF Demagnetizer User Guide). ARM can be imparted with the D-Tech. IRM can be imparted with the two impulse magnetizers present in the lab.

As of October 28, 2022, the IMS-SRM code of the SRM does not include off line treatment. Therefore, when measuring the samples with the SRM the .DSC file, which is read by the uploader MUT2, will contain the information "NRM" in the file name and in the treatment type.

In order to upload the data to LIMS with accurate information, a few steps need to be taken by the scientists/technician.

In the .DSC file, change treatment_type = NRM to treatment_type= IN-LINE AF DEMAG
In the .DSC file, change treatment_value = 0 to treatment_value = "value of AF field" (step 1 in Figure A1 below)
Rename the file by changing _NRM to _INAFvalue and save it (step 2 in Figure A1 below).
Upload with MUT2. The LORE report will have the information as if the sample was measured with the SRM with an "in-line" treatment (Figure A2)

Figure A1. Changing Treatment Type and Treatment Value for an offline treatment in the .DSC file

Figure A2. Corresponding LORE report as if the offline treatment is "in-line"

An alternative to renaming entries and files, the scientists/technician have the possibility to enter codes in the Comment box of the sample information on IMS-SIRM (Figure 26). To keep track of treatment steps in the LIMS download files for offline treatment of discrete samples, the scientists/technician have to use a controlled vocabulary by entering the following codes (in purple) for the offline treatments:

for NRM: NRM
for AF demagnetization at 60 mT (for example): AF:60
for thermal demagnetization at 200 degC (for example): T:200
for ARM with 100 mT AC field and 50 microT DC field (for example): ARM:100:0.05
for IRM in 1000 mT (for example): IRM:1000

This information is found in the .DSC file in the Header (Figure B1).

Figure B1. Location of the "Comment" line in the .DSC file

The controlled vocabulary information will appear in MUT2 in the column "Misc" (Figure B2a) and in the "Result Comments" column of the LORE report (Figure B2b). Note that if the treatment type and treatment value are not changed in the .DSC file, the result will be displayed as NRM in the LORE report (Figure B2b).

Figure B2. Controlled vocabulary information in (a) MUT2 and (b) LIMS.

Other features

A black diamond next to the tray position number indicates that a sample has been assigned to this position. Click on the tray position to display information about the discrete sample in the tray information box in the lower right hand side of the window(Figure 27).
To clear a tray position, hold the CONTROL key on the keyboard and double click the tray position you would like to clear.
The Reload Discrete Tray button reloads the sample names of the last measured tray of discrete specimens. Make sure that the physical samples are placed in the tray in the correct order and position.
Each discrete sample can only be assigned to one position in the tray. If the user tries to assign the same sample ID to two positions in the tray, an error message will appear (Figure 28). Change the Sample ID.

Figure 27- Entry fields on Discrete Sample Entry. Note the ID in the Tray Information window must not be

blank or no name will be assigned to the measurements during the saving process.

Figure 28- Discrete Sample Entry Error Message: Appears when the user

tries to assign one sample name to multiple tray positions.

Database Validation

Whenever there is a live network connection to the LIMS database, IDs entered with either the Scanner or LIMS tabs will be validated and values such as section length for sections halves or sample offset for discrete samples will be updated with the most current value. If the connection fails when either the LIMS tab is selected or when scanning a barcode, the user will see this error message (Figure 29). If you click Check Connection, the program will attempt to connect with the LIMS database, opening the window shown in Figure 30.

If Disable LIMS is clicked or the reconnection fails, the LIMS tab is disabled, the Network Status indicator turns red, and a button labled Connect to LIMS appears (Figure 31). Clicking this button will attempt a LIMS reconnection.

When the Network Status indicator is red, the program will use the information stored in the barcode. Generally, for sections this information is correct but if the core has been curated and the length changed, the length value may be wrong and there is a possiblity that measurment will not include all of the material. It is always good practice to check the length against the meter stick on the sample handler.

Figure 29- Web Services Connection Error

Figure 30- Checking LIMS-JR Web service Connection Window

Figure 31- Network Status Indicator

Figure 32- Invalid background measurement warning message

Sample Entry Caveats

If START is pressed and the background interval and measurement interval are mismatched, the user will receive an error (Figure 32) and be sent back to the IMS-SRM main window.
This prevents the user from measuring a section or discrete samples with invalid or mismatched background data.
The preset must match the label type (i.e., working half preset will only accept a working half label ID). If the preset and label do not match, the user will be notified (Figure 33).

Figure 33- Mismatched label and preset warning message

During a Measurement

Active Display

Once MEASURE is selected, the central IMS-SRM panel (Figure 34) displays. The data are graphed as each measurement is acquired.
As sequential demagnetization steps are completed, new lines in a new color are added to the display, allowing monitoring of changes in the inclination, declination, and intensity with each step.
A variety of graphs can be chosen to view during measurements by selecting a different tab at the top of the screen (Figure 34). These tabs include:
- General view (XYZ moments, inclination, declination, and intensity)
- RAW moments
- Drift-corrected moments
- Background-corrected moments
- Background and drift-corrected moments
- Tray Background
- Flux Counts
The current active measurement step is highlighted under measurement steps in the Information Panel.
During the degaussing process, the active coil, the field being applied, and the status of the coil are displayed on this screen (Ramping up, Tracking, Ramping Down).
If the Degausser Internal error window (Figure 35) appears, abort the sequence or repeat the sequence step once the problem has been corrected.
The maximum flux counts recorded during each step and the remaining flux counts at the end of measurement step can be monitored to identify flux jumps. See the Special Features section for more information on flux jump monitoring.
When a sequence is completed, the program returns to the sample information window.

Figure 34-SRM Display during Measurement

Figure 35-Degausser Internal Error Window

Emergency Procedures

There are multiple features available in the IMS-SRM software and hardware for addressing SRM measurement emergencies. These features are:

SRM Software Abort button
SRM Hardware Abort buttons (2)
Degausser Ramp Down Now command
Loss of Ship’s Chill Water

SRM Software Abort Button

The SRM Software Abort button is on the left side of the screen during measurements (Figure 34). Clicking this button brings up a window with three options (Figure 36).

ABORT Return to Load: Return the section to home. If the Abort was clicked during a degaussing step, the degausser will ramp down before the core is moved to the load position.
ABORT Do Not Move: Leave the core exactly where it was when Abort was clicked and exit the measurement process. This feature is useful if a core is jammed and further action is needed before moving the tray to the load position. Motor power is shut off and the user is given a warning when this option is selected (Figure 37)
Continue: Continue the sequence from the exact point that Abort was clicked.

Figure 36- SRM User Abort Window

Figure 37 Motor Power Turned off Warning

If the user aborts during a degaussing step a dialogue box will appear and the system will automatically begin ramping down (Figure 38). In this status window, the user has multiple options:

Ramp Down: If the system does not automatically begin ramping down, the user may attempt to use the ramp down command. The degausser will not accept a command if it is ramping up or down.
Continue: Move the core back to the first degauss stating position and ramp up the first coil and begin the sequence again. (Currently this behavior is malfunctioning and moves the core to finally staging position and then sends another dialogue box).
ABORT Return to Load: Return the section to home position
ABORT Do Not Move: Leave the core exactly where it was when Abort was clicked and exit the sequence.
Get Status: Ask the degausser for its status and display the results. See the degausser manual for specifics on what each of these codes means (Figure 39).

Figure 38- Degauss Abort Warning Window

Figure 39- Degausser status window

SRM Hardware Abort buttons

There are two hardware Abort buttons for the SRM track system. One is positioned next to the load zone of the track (Figure 40), and the other is above the SRM computer monitors. These emergency stop buttons will immediately stop track motion. These buttons remain locked in position until the user manually unlocks them by twisting the red knob.
The user abort dialogue box (Figure 36) will appear when the hardware abort buttons are pressed. The hardware abort does not control the degausser behavior.

Figure 40- Hardware Emergency Stop Button

Ramp Down Now

Selecting Instruments > SRM: Ramp Down Now from the IMS panel menu (Figure 3) will immediately send the ramp-down command to the in-line degauss controller. If successful, the active coil will ramp down to zero.
ALWAYS check that the degausser control box tracking light is off and the zero light is on after using this command. The manual commands on the degausser should be used if for some reason the computer/software stops communicating with the degausser unit.

Loss of Ship’s Chill Water

The ship’s chill water is used indirectly to cool the Cryomech compressor, which keeps the helium lines under pressure and the SRM at superconducting temperatures. Without chill water the Cryomech compressor will shut down and the SRM will not be operational. A backup Haskris that is air-cooled is always ready to go into service to keep the Cryomech cooled in case of ship's chill water is lost. See the compressor and the backup chill water system manuals for detailed instructions.

Special Features

A few special features are available in the IMS-SRM software to help the user facilitate the measurement process on a variety of materials. These features include:

Pause and Confirm
Exclude Intervals
MagSpy data visualization program
Flux Jump Alarm
LIMS Filters

Pause and Confirm

Typically, a user sets a measurement sequence and lets the program complete the sequence to the last step. But if a user decides they wish to monitor the data collection more closely, a feature called Pause and Confirm is available.

This feature can be turned on or off by selecting the button on the bottom right side of the screen (Figure 41). The button turns blue when pause and confirm is activated. If this feature is on, the IMS-SRM program will pause when it reaches the end of a measurement step and display the pause and confirm window (Figure 42).

There are 6 available actions for the user to select in the Pause and Confirm screen.

Save Data?: When activated, the most recent measurement data are written to a file and placed in the IN folder for upload. The program defaults to saving all data; the user must choose to not save.
Repeat Measurement?: Repeats the measurement that just concluded.
Repeat Sequence Step?: Repeats the demagnetization process and the measurement of the most recent step. (Currently restarts the entire sequence, not just the particular step)
End Sequence?: Ends the sequence immediately; program returns to the sample information window
Insert a New Sequence Step?: Inserts a new step to the sequence during a run without stopping the measurement sequence process. If an additional step is added the sequence will be saved with a new name.
Reduce Speed: User may choose to reduce all movement speeds by 10 or remain at the normal operating speed.

Select ACCEPT to initiate the IMS-SRM program to perform the actions selected in the Pause and Confirm window.

Figure 41- Pause and Confirm Button

Figure 42- Pause and Confirm Window

Exclude Intervals

The Exclude Intervals feature is available in the Sample Information Window (Figure 21) and applies only to section halves, whole rounds, and U-channels. This feature is especially useful when measuring cores with sandy intervals or hard rock pieces that are surrounded by bins of rumble.

To turn Exclude Intervals ON:

1) Click Exclude Intervals to open the Exclude Intervals window (Figure 43).

2) Enter the top and bottom offset of the interval to exclude from measurement. Multiple intervals may be selected at a time.

3) Select OK once all intervals are set. The program returns to the Sample Information window.

The indicator next to the exclude intervals button on the sample information window should now be green (Figure 44).

The excluded intervals will be automatically cleared once the measurement sequence has completed.

Figure 43- Exclude Intervals Window

Figure 44- Exclude Intervals Indicator

To manually turn off or edit the excluded intervals:

1) Click Exclude Intervals to open the Exclude Intervals window

2) Select Clear All to remove all excluded intervals OR select the specific interval to be cleared and select the Clear Interval button. Click Exclude Intervals to open the Exclude Intervals window

3) Click Cancel to exit out of the window

The green indicator next to the exclude intervals button on the sample information window should now be gray.

Caution! The entire section will still be demagnetized! Only the measurement process is controlled by the Exclude feature.

MagSpy Data Visualization Program

MagSpy is opened by selecting Instruments > SRM: Display Plots from the IMS Panel menu (Figure 3), or it can be opened by double clicking the desktop icon (Figure 45).

Figure 45- MagSpy Desktop Icon

Move the red vertical bar along the intensity plot to scroll through each measurement point for a section or each discrete sample in a tray.Plots include: an equal area diagram, Zijderveld plot, demagnetization graph, and graphs of inclination, declination, intensity, and XYZ moments for each discrete sample or point measured on a section (Figure 46).

Only current data can be viewed.
MagSpy includes the ship’s heading data from the WinFrog navigation system (via the JRData Server). If the data is not available, the heading will not update. No error notice will be given.
The Print Current View Button prints the current Zijderveld plot, equal area diagram, and demagnetization plot. The command is sent immediately to the PC’s default printer.

Figure 46- MagSpy Data Visualization Window

Flux Jump Alarm

This feature notifies the user if the remaining negative or positive flux counts during a measurement exceed a user-determined threshold value.

The flux jump alarm threshold parameter is set in the Measurement Editor window found under DAQ > Measurement Editor (Figure 3).
The SRM Parameters window will open and the user may alter the Flux Alarm Threshold value (Figure 9).
If the remaining flux counts at the end of a measurement sequence exceed the flux alarm threshold, the Pause and Confirm window will open with a flux jump warning message (Figure 47).
The user may adjust the data acquisition speed to reduce the likelihood of flux jumps:

Two options are available for DAQ speed reduction (Figure 48).

The speed reduction control is available in the pause and confirm window (Figure 42) and in the sample information windows (Figure 21–Figure 26).

There is no method for shutting the flux jump alarm feature off. To avoid receiving the message the user may simply adjust the flux jump threshold to a higher value.

Caution! If you are receiving a large number of flux jumps, check for cell phones or laptops in the area around the load zone that may not be in airplane mode or may be connecting via the Wi-Fi.

Figure 47- Flux Jump Warning after a measurement

Figure 48- Reduce Speed Drop-down Menu

LIMS Filter

The LIMS filter on the sample information window (Figure 21) allows the user to reduce the number of samples they must search through when entering discrete specimens. This feature is not available for section halves.

Click LIMS Filter to open the LIMS Filter setup window (Figure 49).
To filter for PMAG samples only, enter PMAG in the sample name field.
To save the filter, click Done. Only the discrete samples that match the filter criteria will be shown in the LIMS hierarchy search.
To clear the filter options, select Clear All. Click Done to clear the filter from memory.

Figure 49- LIMS filter setup window

Utilities

There are six main utilities currently available within the IMS-SRM software. These can be found under the Instruments menu (Figure 3). The six utilities are:

1) Time Series Utility

2) DAFI Utility

3) Uturn Utility

4) USB 6008 Utility

5) Data Recovery

6) Degauss Utility

Time Series Utility

The Time Series Utility runs a background measurement over an extended period of time. During this measurement, the tray is not in the SRM. Open the Time Series Utility (Figure 50) selecting Instruments > SRM: Time Series Utility from the IMS Panel menu (Figure 3). The ship’s heading is recorded along with the X, Y, Z moments.

SQUID Meter settings: The user can adjust the SRM settings with controls on the right side of the screen. Options in bold are the default settings used for the SRM.
- Filter: 1, 10, 100 Hz or WB
- Range: 1X, 10X, 100X or EXT
- Slew: On, OFF
- Feedback: Open, Close
  - Period box: Set the frequency of measurements
  - Time Unit Switch: Set time series units to minutes or seconds with the control on the top of the screen.
  - Select START to begin the measurement (button label will toggle to STOP).
  - Select STOP to end the measurement process.
  - Clear graphs: Use Clear Graphs to clear any previous data from the screen.
  - Save data: Select this button to output the data currently shown on the graphs to a .csv file
    - Note: Right click on the individual graphs to open a context menu and export the data for that graph directly to MS Excel. This will only output the data for the selected graph.
  - Select Done to close the Time Series Utility.

Figure 50- Time Series Utility during Measurement

DAFI Utility

The DAFI utility collects and displays 3 channels of data from the National Instruments USB-6008 Multifunction I/O device (or any equivalent DAXmx compliant device) against track position. This means that the USB-6008 can be connected to the XYZ analog output of the 2G Applied Physics 520 Fluxgate or the single channel analog output of the LE Model 6010 Gauss/Teslameter (Hall Probe) and used to measure the field in the SQUID measurement region or to measure the field produced by the AF demag coils.

This is best done as a two-person experiment so someone can monitor the cables as the instruments are run through the SRM.

The DAFI Utility (Figure 51) is opened by selecting Instruments > SRM: DAFI Utility from the IMS Panel menu (Figure 3).

1) Secure the Fluxgate or Hall probe in the section-half boat and note the position of the measurement sensor.

2) Enter the position of the measurement sensor into the ‘In Tray Offset’ field. Recommended position is 140 cm.

3) Set the measurement interval in the ‘DAQ Interval’ field and the number of measurements to average at each position in the ‘Average’ field.

4) If you are using the Fluxgate magnetometer, set the range of the probe in the ‘Range’ field. Recommended range is 10 mOe.

5) Set the Start and End offset for the measurements. The tray will move to place the sensor at the Start offset before any measurements are taken.

Example: If you wish to begin measurements at 160 cm from the home position, enter 160 cm in the start offset field.

6) Click START and monitor cables as the tray moves into the SRM. The measurement window will open (Figure 2) and the measurements will begin.

7) Data will be saved automatically to C:\AUX_DATA\DAFI when measurements are successfully completed.

Figure 51- DAFI Utility Setup Window

U-Turn Utility

The U-turn utility is used when a core has been put into the SRM with the top of the core nearest the SRM. The background data is applied incorrectly in this situation, and therefore the values need to be recalculated. This utility performs the recalculations and produces data files for upload.

The U-Turn Utility (Figure 52) is opened by selecting Instruments > SRM: U-Turn Utility from the IMS Panel menu (Figure 3).

Select a mode for correcting the data (Figure 53).
- Change to Working flips the data so that the data is in working coordinates
- Change to Archive flips the data so that the data is in archive coordinates
- Flip Top to Btm corrects the data when a core is placed in the track with the top of the core toward the SRM
- Select a file or a folder of files to correct
  - Select Read File to correct one file
  - Select Process Folder to correct a large number of files. Before selecting process folder, place the files to be corrected in a new folder.
  - Once the Read File or Process Folder button is selected, a browser window will open. User should select a file or folder of files to correct.
  - The folder of processed data is output as soon as Process Folder is selected in the browser window
  - For a single file, user must select Confirm to output the files on the U-turn screen to output the file

The files are written directly to C:\Data\IN

Figure 52- U-Turn Utility Window

Figure 53- Close up of U-Turn Mode Selection Drop Down Menu

When a single file is processed the U-Turn utility will display the original file, the corrected file (Figure 54), and a sample comparison window (Figure 55). The user can page between each of these windows using the tabs. Nothing will be displayed if the Process Folder button is used.

Figure 54- U-Turn Utility Corrected File Display

Figure 55- U-Turn Utility Sample Comparison Window

USB6008 Utility

The USB6008 Utility is a free-form utility designed to allow the user to hook up any instrument to the USB6008 (Figure 56). This can be particularly useful in locating the position of the SQUIDS and Degauss Coils when used with the Motion Widget control. During field trapping, the USB6008 can be attached and the signal of each SQUID can be monitored with this utility.

Open the Motion Widget window by selecting Motion > Motion Widget from the IMS front panel (Figure 3).

This step is necessary if you wish to dynamically adjust the position of a hall probe, fluxgate, or other device while using the USB6008 utility.
In the Motion Widget window the tray position can be adjusted using relative or absolute moves (Figure 57).

The USB6008 utility is opened by selecting Instruments > SRM: USB6008 Utility from the IMS front panel (Figure 3).

The utility immediately begins to measure (Figure 58).
Adjust the position of the sensor and tray using the motion widget.
When measurements are complete, click Done to exit.

Figure 56- USB6008 Device

Figure 57- Motion Widget Window

Figure 58- USB6008 Utility Window

Data Recovery Utility

During normal and background data acquisitions, all pertinent data is recorded to a LabVIEW data log file in real-time as a means to recover data in case of a hardware/software crash or file corruption.

NOTE, this data is overwritten each time a new measurement starts (when the first drift measurement is taken). Recovery of previous data must be completed prior to the first drift measurement.

To recover data from the data log file select Instruments > SRM: Data Recovery from the IMS panel menu (Figure 3). Data from the data log is immediately written to both the SRM load (data upload file format) and the standard backup file (csv format). The data recovery window opens to confirm completion of operations (Figure 59).

Figure 59- Data Recovery Utility Window

Degauss Utility

The degauss utility can be used to send commands to the degauss controller and to retrieve the status of the degauss controller (Figure60). The user can ramp up, ramp down, and get the current status of each coil. The utility will automatically ramp down after a set amount of time to prevent over heating the coils.

Get Status can be pressed while the system is ramped up or down. If the status window appears blank, try again. The system may have been between commands when the Get Status command was sent.
- The value behind the letter A is the field the degausser is at in Gauss.
- The letter following the C is the active coil.
- See the degausser vendor manual for further details on what the values in the status window mean.

Figure 60 Degauss Controller Utility. The status window displayed in the right side image appears when Get Status is pressed.

File Formats and File Uploading

Data Upload Files

Data upload files are text files used by the MUT application to load acquired data into LIMS. Files with the SRM extension contain section (whole round and U-channel) data, and files with the DSC extension contain discrete data. Either file is written to the C:\DATA\IN folder where MUT will process them and then move them to the C:\DATA\ARCHIVE folder. Any file that fails to upload is moved to the C:\DATA\ERROR folder.

Sections

SRM data files are written for each sequence step and in addition to the section data, include the leader, trailer, and the two drift measurement data points.

Discrete

DSC data files are written for each sequence step and each discrete sample. These files include discrete specimen data and the two drift measurement data points (duplicated for each file). There is no leader or trailer data in this context.

Auxiliary Files

Auxiliary files are csv formatted text files written for both section and discrete data types. These are “kitchen sink” files that contain both final and intermediate calculation data, rotational data, flux counts, process values (demag level) etc. One file of this type is referenced in the data upload file between the <FILE> tags and is archived in the ASMAN database.

Sections

In a section file, each row is a single measurement starting with the Drift #1, Leader, Section, Trailer, Drift #2. File names are Sample ID, Text ID, Time stamp, and Demag level; therefore there is only one file per section per sequence step.

Section data is saved in the folder: C:\AUX_DATA\SRM\SECTION.

Discrete

In a discrete file, each row is a single measurement ordered as Drift #1, Sample, Drift #2. File names are Sample ID, Text ID, Time stamp, and Treatment; therefore there is only one file per discrete sample but it contains all of the sequence steps for that sample. Note, because of the format, repeated measurements for discrete samples will end up in the same file.

Discrete data is saved in the folder: C:\AUX_DATA\SRM\DISCRETE.

Background Files

Background files are text files written in a standard csv format. They contain the acquisition parameters, tray definition, and include both the raw and drift correct values for the SQUID’s XYZ values. Either the section or the discrete file is referenced in the data upload file between the <FILE> tags and is archived in the ASMAN database.

Sections

The filename contains the type of tray, time stamp, and treatment.

File is saved in the folder: C:\AUX_DATA\SRM\SECTION-BKGND.

Discrete

The filename contains the type of tray, time stamp, and treatment.

File is saved in the folder: C:\AUX_DATA\SRM\DISCRETE-BKGND.

Measurement Sequence File

The sequence file is a text file written in a standard .ini format and contains the data that describes each sequence step (process values). This file is referenced in the data upload file between the <FILE> tags and is archived in the ASMAN database.

File is saved in the folder: C:\IMS\CONFIG_SIRM\User Sequence Files.

At the end of an expedition, this folder should be cleared of all sequence files.

SRM Configuration File

The configuration file is a text file written in a standard ini format. There is only one current configuration file that contains a snapshot of all the pertinent data that was used during acquisition. This file is referenced in the data upload file between the <FILE> tags and is archived in the ASMAN database.

File is saved in the folder: C:\IMS\CONFIG_IMS.

Motion Control Setup:

Motion control should be set during initial setup and further changes should not be necessary. Motion control setup can be accessed by selecting Motion > Setup from the IMS panel menu (Figure 3). The M-Drive Motion Setup control panel will open (Figure 61).

The user may select between four setup panels from this window.
- Motor and Track Options
- Fixed Positions
- Limit and Home Switches
- Motion Profiles

Figure 61- M-Drive Motion Setup

Motor and Track Options menu

Once these values have been properly set, they should not change. This panel is only for initial setup.

Make sure to use the values shown for the SRM (Figure 62).

The relationship between motor revolutions and linear motion of the track is defined in this window and is critical to both safe and accurate operation.User should be familiar with the M-Drive motor system prior to adjusting these settings.

- Select Axis: In the case of the SRM it is always X.
- Encoder Pulses/rev: Defined by the manufacturer of the M-Drive as 2048.
- Screw Pitch: Set 1.000.
- Motor Gear: 15.873.
- Actuator Gear: 1.000
- Gear Ratio: 0.063.
- Direction: Counter-Clockwise rotation moves the tray in a positive direction (from home to end of track).
- Click the Motion Utlity button to open the Motion Utility window (Figure 63) and test the settings. Click Close to exit this window.

Click Done to save the values or Cancel to return to previous values.

Figure 62- SRM Motor and Track Options Setup Window

Figure 63- Motion Utilities Window

Fixed Positions menu

Once these values have been properly set, they should not change. This panel is only for initial setup.

In this window the user may define fixed track locations used by IMS motion control. For the SRM make sure to use these value unless there has been a physical change to the system (Figure 64).

Select Axis: In the case of the SRM it is always X.
Max Section Length: Maximum length of section that can be placed in the track. This value is set to 160 cm.
Track Length: Distance in cm between the limit switches. Use the Motion Utility (Figure 63) to determine this value by moving from limit switch to limit switch plus the length of the tray used.
- Load and Unload: For the SRM set to 0. This will always bring the tray back to the sample load end after a measurement sequence.
- Top-of-Section Switch?: Not used.
- Top-of-Section Switch Offset: Not used.
- Push Past: Not used.
- Fast Past: Not used.
- Run Out Switch?: On.
- Click the Motion Utiilty button to open the Motion Utility window (Figure 63) and test the settings. Click Close to exit this window.
- Click Done to save the settings. Click Cancel to return to previous values.

Note, these values along with the positions set in the Degauss-Drift Location window and the SQUID offset set in the SRM setup window are necessary to fully define the track geometry. Take a lot of care in setting these values!

Figure 64- SRM Fixed Positions Window

Limit and Home Switches Window

Once these values have been properly set, they should not change. This panel is only for initial setup.

This panel is used to define the orientation of the track system, limit switches, and the home switch (Figure 65). On 396T a second switch was added to the out end of the track (CW) so home is found by both the CW limit and home switches.
- Select Axis: In the case of the SRM it is always X.
- Select Track and Home Geometry: For the SRM, select CW Look @ CCW Edge.
- Click the Motion Utility button to test the settings.
- Click Accept to save the settings. Click Cancel to return to previous values.

Figure 65- SRM Limit and Home Switches Window

Motion Profiles

The motion profiles window can be used to adjust the speed and acceleration profiles used by the track (Figure 66) for various types of movements but also have defined limits.

Setting the correct values for the motion profile takes a little experimentation to make the track run efficiently and safely. It is not unusual to modify these values as the lithology changes to balance the need for speed without inducing flux jumps.

DAQ Move: This profile controls moves between measurement positions (leader and trailer measurements included). Set this to a reasonable speed with gradual acceleration and watch out for flux jumps. In addition, when you use the speed reduction feature to control flux jumps, this value is the base value for the reduction.
Limit Seek: This profile is used for the following moves:
- This profile finds the limit switch location. Do not exceed 3 cm/sec. Do not use a large acceleration value, but always use a large deceleration value.
- Home Final: This profile finds the final location of the home switch. Do not exceed 3 cm/sec. Do not use a large acceleration value, but always use a large deceleration value.
- Load/Unload: This profile is used for moving the tray in and out of the SRM for general movements and moving out of the SRM to the final position prior to ending a measurement or beginning the next degaussing step.
- Drift 1: This profile is used to move to the drift 1 position. If a drift 1 measurement is the first step in a selected sequence, the drift 1 profile settings will trump the load/unload profile for moving the tray into the SRM.
- Drift 2: This profile is used to move the tray from the last trailer position to the drift 2 position
- Degauss Stage: This profile is used to move to the degauss start position
- Degaussing: This profile is used to move the section/discrete samples from degauss stage position through the in line AF degauss coils for X, Y, and Z.
- User Define: This profile is used for testing only in the Motion Utilities (Figure 63) program.
  - Click the Motion Utility button to open the Motion Utility (Figure 63) window and test the settings.
  - Click Done to save the settings. Click Cancel to return to previous values.

Figure 66- Motion Profiles Window

SRM Communications and Control Setup (SQUID, Degauss Controller, and USB 6008)

The technician should fully understand how to use this information present in the following sections as it is critical to setup the hardware and communicate with the SRM.

MAX Configuration Report and VISA Alias(es)

Data communication and control are USB based and managed via NI Measurement & Automation Explorer (NI-MAX). When you open NI-MAX and expand the Device and Interface section the devices and names should appear as seen in Figure 67 . The transcription is a list of devices and interfaces with their respective VISA aliases. The VISA Alias(es), shown in blue throughout this section, are how IMS identifies each device and the COMs and ASRL#s are assigned by the computer, shown in grey throughout this section. After certain events (i.e. rebooting), the computer may assign the COMs and ASRL numbers differently; this does not matter as long as the aliases are exactly as the are show here and correspond to the specific physical connection between the computer and the instrument. In the shown MAX configuration report, the COMs and ASRL#s are the same but assigned out of order. Again IMS uses only the VISA Alias, so as long as they are named EXACTLY as show in Figure 67, it is not necessary to match the COMs and ASRL#s.

Devices and Interfaces

NI USB-6008 "DAFFI" (Analog input device used by DAFI and USB 6008 Utilities)
NI USB-232 Interface “RS-232 SN:00DCEFBB”
- 1: ASRL5::INSTR “CRYOMECH”
NI USB-232/4 Interface "RS-232 SN:01A6252E" (SQUID and DEGAUSS CONTROLLER)
- 1: ASRL7::INSTR "X-SQUID"
- 2: ASRL8::INSTR "Y-SQUID"
- 3: ASRL10::INSTR "Z-SQUID"
- 4: ASRL9::INSTR "DEGAUSS"
NI USB-485 Interface "RS-485 SN:00DCDFE3" (MOTION CONTROL)
- 1: ASRL6::INSTR "X-AXIS"

Figure 67- Screen capture and transcription of NI Max Device and Interface Menu showing devices and VISA Alias(es). "Dev2" in the screen capture is not critical to the SRM system.

Setting the VISA Alias for "DAFFI", "CRYOMECH", and "X-AXIS" is straight forward since for each device there is only one port, but the NI USB-232/4 Interface "RS-232 SN:01A6252E" has 4 ports, so the VISA Aliases must be correctly assigned specifically to each ports as shown below. All USB devices, ports and connections are properly labeled to assist in verifying the alias to device relationships. When the setup is change in anyway, all labeling and SOPs should be correspondingly updated to match the correct configuration.

To change a VISA Alias, simply click on the specific "device" and change the "Name" under settings in the right hand panel. Most devices on the list in the left hand panel need expanding to show their respective details.

Device Specific Port Details (baud, parity, etc)

NI USB-6008 "DAFFI"

This optional device works with the USB6008 Utility and displays input various inputs. It is currently configured for BNC inputs to monitor the Fluxgate Magnetometer and the Gauss Meter (Hall probe).

Name DAFFI
Vendor National Instruments
Model NI USB-6008
Serial Number 0164AF4C
External Calibration

NI USB-232 Interface “RS-232 SN:00DCEFBB"

This is the connection for the Cryomech Compressor for monitoring purposes.

ASRL5::INSTR "CRYOMECH"

Name CRYOMECH
Slot Number 1
Port Binding COM5
VISA Resource Name ASRL5::INSTR
Port Settings
- Baud rate 9600
- Data bits 8
- Parity None
- Stop bits 1
- Flow control None
- Resource Name ASRL5::INSTR
- Device Type Serial Port
- VISA Alias on My System CRYOMECH
- Device Enabled True

NI USB-232/4 Interface "RS-232 SN:01A6252E"

This is a four port USB to RS-232 serial device. This device connects the serial port cables from the three SQUID meters and the Degauss Controller.

1: ASRL7::INSTR "X-SQUID"

Name X-SQUID
Slot Number 1
Port Binding COM7
VISA Resource Name ASRL7::INSTR
Port Settings

Baud rate 1200
Data bits 8
Parity None
Stop bits 1
Flow control None
Resource Name ASRL7::INSTR
Device Type Serial Port
VISA Alias on My System X-SQUID
Device Enabled True

2: ASRL7::INSTR "Y-SQUID"

Name Y-SQUID
Slot Number 2
Port Binding COM8
VISA Resource Name ASRL8::INSTR
Port Settings
- Baud rate 1200
- Data bits 8
- Parity None
- Stop bits 1
- Flow control None
- Resource Name ASRL8::INSTR
- Device Type Serial Port
- VISA Alias on My System Y-SQUID
- Device Enabled True

3: ASRL10::INSTR "Z-SQUID"

Name Z-SQUID
Slot Number 3
Port Binding COM10
VISA Resource Name ASRL10::INSTR
Port Settings
- Baud rate 1200
- Data bits 8
- Parity None
- Stop bits 1
- Flow control None
- Resource Name ASRL10::INSTR
- Device Type Serial Port
- VISA Alias on My System Z-SQUID
- Device Enabled True

4: ASRL9::INSTR "DEGAUSS"

Name DEGAUSS
Slot Number 4
Port Binding COM9
VISA Resource Name ASRL9::INSTR
Port Settings
- Baud rate 1200
- Data bits 8
- Parity None
- Stop bits 1
- Flow control None
- Resource Name ASRL9::INSTR
- Device Type Serial Port
- VISA Alias on My System DEGAUSS
- Device Enabled True

NI USB-485 Interface "RS-485 SN:00DCDFE3"

This is the connection to the M-Drive interface board to control the track motion.

ASRL6::INSTR "X-AXIS"

Name RS-485 SN:00DCDFE3
Vendor National Instruments
Model NI USB-485 Interface
Serial Number 00DCDFE3
Name X-AXIS
Slot Number 1
Port Binding COM6
Port Description Unknown
VISA Resource Name ASRL6::INSTR
Port Settings
- Baud rate 9600
- Data bits 8
- Parity None
- Stop bits 1
- Flow control None
- Property Value
- Resource Name ASRL6::INSTR
- Device Type Serial Port
- VISA Alias on My System X-AXIS
- Device Enabled True

SRM Maintenance Procedures

The following section includes instructions on how to:

Release Trapped Flux from within the SRM
Measure the Response Lengths of the SQUIDS
Check the Degauss Coil Function
Collect a Field Profile within the SRM
Check the Calibration Factors for the SQUIDS

Releasing Trapped Flux

When magnetically strong materials are passed through the SQUID measurement region it is possible to trap flux within the SRM. This is particularly a problem after hard rock expeditions. The best way to recognize trapped flux is by monitoring the SQUID readouts for extra noise and drift. Trapped flux cannot be measured with the Fluxgate magnetometer.

To release trapped flux:

Connect the oscilloscope to the SRM so that the signal wave form can be monitored
1. Oscilloscope Aux IN to Model 581 DC SQUID System Z axis SYNC
2. Oscilloscope Channel 1 to Model 581 DC SQUID System Z axis AC Output
3. Do not hook up the nulling coil cables. 2G recommends attempting to release the trapped flux without the nulling coils first and checking the resulting field and performance of the SQUIDS.
4. Heat up the SQUIDS using the Model 202 Control Monitor until the oscilloscope signal becomes a flat line.
  1. Turn on the SQUID and Strip-line heaters. Press and hold the shield heater button until the red indicator turns on.
  2. The oscilloscope signal should be lost when the temperatures reach 7 K. Once the signal has become noisy, continue to step 3.
  3. Turn off the heaters and allow the system to cool
  4. Measure the trapped field within the SQUID region using the Fluxgate magnetometer
    1. Measure a full field profile and save the data to the Field Profile folder in IODP Share: Pmag Documents
    2. If it appears that a high field was trapped within the SQUIDS it may be necessary to go through the entire field trapping procedure (See appendix B).
    3. Record the temperatures of the shields and SQUIDS on the SRM log sheet once the system has settled.

Measuring SQUID Response Lengths

Each SQUID has a unique response length based on the geometry of the system and the SQUID orientation. To measure the response lengths of each SQUID you may use a point source. The point source must be moved through the sensor region of the SRM over a distance longer than the length of the response functions. The measurements must be made 3 times, once for each axis. The point source will need to be adjusted between each measurement so that the axis of the source is aligned along each of the axis of the magnetometer. The point source should be centered in the bore of the SRM. Using the discrete boat, but running the system as a section half can help facilitate this. Recommended point sources for these measurements are the AGICO JR6 standard (Do not demagnetize this standard!), black plastic cube with a metal pin, or the Applied Physics Calibration coil. The recommended method is using a cube with a point source. Using the calibration coil for these measurements is time consuming and labor intensive.

Measuring a Response Curve using a point source cube:

Set the measurement interval to 2 mm in the DAQ> Measurement Editor menu and set the Leader/Trailer length to 0 cm (Figure 9).
Set the tray length to 50 cm in the DAQ> Section Tray Editor menu (Figure 6).
Collect a section half background measurement for the empty tray by selecting DAQ> SRM: Section Background from the IMS-SRM menu.
Place the point source in the discrete sample boat with the point source in the X position. Make sure the point source is positioned so that it is centered in the bore of the SRM.
1. Positioning the cube at 20 cm in the tray is recommended.
Select Start in the IMS-SRM software (Figure 2).
Select an archive section half sample type and orientation on the left hand side of the screen (Figure 22).
Ensure the measurement sequence is set to NRM only (Figure 20). DO NOT DEMAGNETIZE THE STANDARD!
Select the Manual sample entry tab and enter a sample ID and LIMS ID for the test (Figure 23).
1. Suggested naming convention includes which axis is aligned with the SQUID. i.e. Sample ID: Standard Cube; LIMS ID: Response Length-X axis
Enter a User Length for the ‘core’
1. A length of 20 cm on each side of the point source should cover the entire response region for all three axes. i.e. If the cube is at 20 cm the user length should be set to at least 40 cm.
Select USE ID and Length Values and press the Measure button
The tray and sample will move through the measurement region collecting a measurement every 2 mm over the selected user length.
When the measurements are complete, the data will be written to a standard .SRM file and placed in the IN folder and to a .csv file in the AUX Data: SRM: Section folder. The .csv file will be the most useful.
Reposition the point source so that the Y axis is aligned with the Y SQUID and complete steps 8-10 again.
Reposition the point source so that the Z axis is aligned with the Z SQUID and complete steps 8-10 again.

Measuring a Response Curve using the Applied Physics Calibration Coil:

Position the Applied Physics coil in the section half boat. Center the coil in the bore using putty or foam to raise the coil off the bottom of the tray.
Connect the calibration coil to the calibration coil power supply via a BNC cable.
1. The cable should be long enough to allow the coil to travel through the measurement region while the power supply remains on the desk.
Set filter on Model 581 DC SQUID system box to 100 HZ.
Connect multimeter to the Output of the X axis SQUID. Set the mulitmeter to measure AC voltage.
Set the power supply box to AC and turn on the power supply
Open the IMS-SRM Motion Widget
Move the calibration coil into the SRM while monitoring the voltage read out on the multimeter. Find the peak voltage.
1. This position will vary depending on where the coil is positioned in the boat.
2. According to Bill Goodman the peak voltage for Z axis should be approximately 1.05 V but the transverse coil value will be reduced by a factor of two.
Move the coil back toward home by 20 cm
Record the position of the tray from home and the AC Voltage displayed on the multimeter for this position
Move the coil forward by 1 cm and record the voltage again.
1. Repeat this process until you have gone 20 cm past the center of the coils.
2. A smaller measurement increment can be used if more resolution is desired.
Move the calibration coil back to the home position.
Reposition the coil for the Y axis and connect the BNC cable from the multimeter to the Y axis SQUID display. Repeat steps seven through 11.
1. To switch to the Y axis, rotate the entire coil wand 90 degrees
Reposition the coil for the Z axis and connect the BNC cable from the multimeter to the Z axis SQUID display. Repeat steps seven through 11.
1. To switch to the Z axis carefully unscrew the coil from the wand and reorient the coil and reattach
Compile the recorded data (offsets and voltages) into a single spreadsheet.

Calculating Response Length:

Open the .csv files associated with the response length measurements in Excel to view the X, Y, and Z moments.
Compile a worksheet with the following columns: Offset, X moment, Y moment, and Z moment
1. The X moments should be taken from the measurement when the point source was in the X position, etc.
Response length calculations will not work if the peak moment is a negative value. If the axis was measured in the negative direction, multiply all of the moment values for that axis by -1.
Normalize each set of moment values
1. Find the peak moment value for X and divide all of the X moments by this value. Do the same for Y and Z.
Open Kaleidagraph and insert the offset and normalized moment data into the data table (Figure 68). Make sure the columns are formatted as numbers and not as text.
Plot 3 scatter plots of normalized moment vs offset, one for each axes
1. The graphs should have a bell curve shape with slight negative lobes (Figure 69).
Integrate the area under each curve. The integrate- area function in Kalediagraph works well for this calculation.
1. When the data table (Figure 68) is selected in Kalediagraph, a MACROS menu is available at the top of the page. Select Integrate-Area from this menu.
2. In the next window, enter which column of data is the X axis and which is the Y axis of your plot (Figure 70). X should be offset and Y should be the moment values. Select OK.
3. In the next dialogue box enter the maximum and minimum X values (Figure 71). These values should be set so that the negative lobes of the curves are included in the calculation. The Yref value should be set to 0. Select OK.
4. The value reported is equal to the response length (Figure 72). These values should range from 7 to 9 cm depending on the SQUID axis.

Figure 69- Example graph of normalized moments vs offset.

Figure 70- Prompt window allowing user to select data to use for the integrate area function.

Figure 71- Prompt window allowing user to select the area of the curve to use for the integrate function.

Figure 72- Integrate Area Results window.

8. Compare the results obtained in these response length measurements with the response length values stored in the SRM setup window (Figure 4). Make sure you are confident in the values you calculate before considering changing the values used in the SRM software.

Check Degauss Coil Function

The function of the degauss coils should be checked periodically to ensure the desired fields are being produced. For this procedure, you will need the axial and transverse Hall probes and the model 6010 Gauss meter. Each coil will require a separate measurement. The Z coils is measured using the axial probe. The X and Y axes are measured using the transverse probe.

Measuring the field produced by the degauss coils:

Secure the Axial probe in the section half tray with probe end centered at 140 cm from the home switch. The probe should be centered in the bore (Figure 73).

Figure 73 Hall probe in the Z axis orientation

2. Set the Degausser System Controller to Manual mode. And set the axis selector to Z (Figure 74).

Figure 74 Degausser Control unit. Red box indicates the toggle switch for switching to manual mode.

Green box indicates the dial for setting the alternating field in Gauss. Blue box indicates the axis selector control.

3. Connect probe to Gauss Meter and turn the meter on.

4. Set the units to mT and select AC mode on the Gauss Meter. Make sure the meter is in automatic range mode.

5. Select Motion> Motion Widget from the IMS menu.

6. Move the tray into the SRM so that the Hall probe is positioned within the Z degauss coil region.

a. For the Z axis with the probe near 140 cm in the tray, the peak field should be found near 261 cm from the home switch.

7. Set the maximum field value on the Degausser controller.

a. The controller is operated in Gauss, so a value of 200 on the dial is equal to 20 mT. Do not set a high field. The coils will be on for an extended time during the tests and may heat up.

8. Press the Ramp Up command on the degausser controller.

9. Once the Tracking light turns on adjust the position of the Hall probe using the motion widget until the peak value is found.

a. Using the HOLD (Max) features of the meter may help to identify the actual peak value as the meter is moved through the degauss coil region.

10. Record the peak value.

a. The value displayed on the Guass meter in AC mode is a true RMS value of the waveform with the dc component removed. To correct the read out value to mT multiply by the RMS correction factor of 1.414.

b. Example: Degauss unit set at 20 mT. Read out on Guass meter is 15.81 mT. Actual produced field is 22 mT.

11. Press the Ramp Down button on the degausser controller.

12. Move the tray to the Home position using the motion widget.

13. Remove the axial probe from the tray and place the transverse probe in the tray. Position the probe to read the X coil (Figure 75).

Figure 75 Hall probe in the X axis orientation

14. Set the axis selector on the degausser controller to X.

15. Use the motion widget to move the probe into the X degauss region and repeat steps 8 to 12.

a. If the probe is positioned at 140 cm in the tray, then the peak field should be found near 243-246 cm from the home switch.

16. Reposition the probe to read the Y coil output (Figure 76).

Figure 76 Hall probe in the Y axis orientation

17. Set the axis selector on the degausser controller to Y.

18. Use the motion widget to move the probe into the Y degauss coil region and repeat steps 8 to 12.

a. If the probe is positioned at 140 cm in the tray, then the peak field should be found near 277-280 cm from the home switch.

19. When finished with testing, set the degausser controller back to computer mode. The IMS software may need to be restarted after the mode has been changed back.

Measuring the Field Profile within the SRM

At the start of each expedition, the field profile within the SRM should be measured using the Fluxgate magnetometer and the DAFI utility in the IMS-SRM software. This data is retained in IODP Share> Pmag Documents: SRM: Field Profiles as .xlsx files. The field within the SQUIDS should be in the 0 to 20 nT range. If the field within the SRM is determined to be high, the field trapping procedure outlined in Appendix A should be followed.

Collecting a field profile:

Position and secure the Fluxgate magnetometer in the section half boat. There are two Fluxgate magnetometers available. The magnetometer should be centered near the 140 cm mark to ensure there is enough cable to measure along the entire track. You can also decide to center near the 80 cm mark.
Connect the USB6008 BNC cables to the back of the Fluxgate Control box.
Set the range of the fluxgate to 10 mOe.
1. This range will be too sensitive for outside of the shields, but should be appropriate within the measurement region within the SRM.
Open the DAFI program in the IMS-SRM program
Set the in tray offset (140 or 80 cm), DAQ Interval (usually 1 cm), average (e.g., 2 cm), and range in the DAFI window (i.e., 10 mOe).
Set the start and end offset.

a. These are the track positions between which the measurements will be taken with the DAFI program. The Fluxgate will be moved to the start position before any measurements are taken.

b. Recommended offsets if Fluxgate is positioned at 140 cm in the tray are:

i. Start offset: 150 cm.

ii. End Offset: 400 cm.

c. Recommended offsets if Fluxgate is positioned at 80 cm in the tray are:

i. Start offset: 200 cm.

ii. End Offset: 400 cm.

7. Select Start and monitor the cable of the fluxgate as the tray moves through the SRM.

8. A .csv file will be written to C: AUX_Data\DAFI.

a. These files contain the X, Y, and Z meter values in mOe as they would be read from the Fluxgate magnetometer displays and the meter values converted to nT.

9. Save the file as an .xslx file in the IODP Share> Pmag Documents: SRM: Field Profiles folder

a. It is recommended that a plot of the field along each axis vs offset be created.

b. Monitor for significant changes in the field or areas of leakage in the shielding.

It may be necessary to conduct multiple measurements using different ranges of the fluxgate, depending on what information is desired. The field around the shield joints will be too high for the 10 mOe range, but the 1000 mOe will not be sensitive enough for the measurement region of the SRM.

Checking SQUID Calibration Factors

Applied Physics provided calibration factors for the SQUIDS upon delivering the SRM. This procedure is done using a speciality calibration coil which is used for each system they produce. Applied Physics also provided a calibration coil to IODP, but it is not identical to the original coil.

The Applied Physics coil calibration constant is:

C= 3.252 emu/A

The calibration factors should not be altered in the SRM software without serious consideration. The IODP coil can be used to check the calibration factors if the user wants to verify the systems function.

The calibration coil uses a small power supply box that reduces issues with RFI while using the coil. The power supply use two 9 volt batteries. The values produced are usually 1-3 percent different than the values supplied by the Applied Physics coil due to manufacturing differences. The calibration coil can be repositioned on the rod to measure the axial and transverse signals (Figure 77). A multimeter is used to read the output voltages from the coil and the calibration factor is calculated based on these values.

Figure 77 Calibration coil orientations. A) Z axis, B) Y axis, and C ) X axis.

D and E illustrate how to reposition the coil on the wand.

Be aware that proper experiment setup is critical to obtaining valid results. If the coil is not centered in the SQUIDs, the SQUID signal and voltages measured will be inaccurate. It is best to do these measurements when the ship is stable.

Applied Physics calibration constants for the SQUIDS:

C_X= 8.1036 E -5 emu/Φ₀

C_Y= -8.2590 E -5 emu/Φ₀

C_Z= 3.8825 E -5 emu/Φ₀

Supplies needed:

4 BNC cables
Oscilloscope
1. Adjust the settings to a horizontal scale of approximately 4.00µs and the vertical scale to approximately 2 V.
2. Set the oscilloscope source to AUX
Multimeter
Applied Physics calibration coil and power supply

Measuring and Determining the SQUID Calibration factors:

Connect the Calibration coil to the power supply and set supply to DC mode
Connect Aux In on the oscilloscope to the Sync on the back of the Model 581 DC SQUID system
1. The coil orientation should correspond with the Model 581 DC SQUID system, i.e. if connected to the Z axis Model DC SQUID system, ensure the coil is in the Z position
Connect Channel 1 on the oscilloscope to the AC Out on the back of the Model 581 DC SQUID system
Adjust the potentiometer (pot) on the calibration coil power supply to zero (turn knob all the way counter clockwise)
Set the Model 581 DC SQUID system to 100 HZ filter
Center the coil in the SQUIDS.
1. To find the center of the SQUIDS with the calibration coil:
  1. Connect the multimeter to the Output on the front of the Model 581 DC SQUID system. The SQUID should be locked.
  2. Set the calibration coil power supply and the multimeter to AC
  3. Move the coil into the SQUIDS using the Motion Widget utility in the IMS software.
  4. Find the peak voltage. This should be the center of the SQUIDS.
* If the coil is not properly centered, the oscilloscope signal and voltage reading will be inaccurate and the final SQUID calibration constant will be incorrect.
Disconnect the multimeter from the output of the Model 581 DC SQUID system.
Connect the mulitmeter to the calibration coil power supply X mon port
Set mulitmeter and calibration coil power supply to DC
Unlock the SQUID using the black button on the front of the Model 581 DC SQUID system
While monitoring the signal on the oscilloscope, adjust the pot on the calibration coil power box to the first double frequency point, and then continue to the second double frequency point.
Record the voltage from the multimeter while at the second double frequency point.
1. This voltage will be used to determine the SQUID calibration constant
Return the tray and coil to the home position using the IMS Motion Widget
Repeat steps 4 through 13 for the remaining two coil axes.
1. Remember to switch the BNC cables to the appropriate Model 581 DC SQUID system ports.

*Once measurements are complete, make sure to LOCK the SQUIDs.

Calculating the SQUID Calibration Constants

Using the formulas and C_x,y,z= C x I, calculate the coil calibration factor,

V= Voltage measured

R = 500,000 Φ₀=Resistance

I= Current

C=3.252 emu/A =Coil Calibration Constant

C_x,y,z=Coil calibration factor (emu/Φ₀)

Example Calculation of SQUID calibration constant:

If the measured voltage is 12.27 V,

Multiply this value by the coil calibration constant to get the Calibration Constant for the SQUID:

The resultant values should be similar to those provided by Applied Physics.

IODP measured calibration constants for the SQUIDS during Exp 372:

C_X= 8.66 E -5 emu/Φ₀

C_Y= -8.19 E -5 emu/Φ₀

C_Z= 3.56 E -5 emu/Φ₀

Appendix A: SRM Field Trapping Procedure

This guide is intended to assist technical staff with trapping a low magnetic field inside of the SQUID response region. This procedure will need to be done any time the SRM warms to temperatures above superconducting (7 K) or if a large trapped field is suspected within the SQUID response region.

Prior to beginning this process, check the fluxgate zeros in a mu-metal shield. Zero the fluxgate if necessary (see a procedure below). Measure the field trapped inside the SRM prior to heating and retrapping a field to obtain a baseline measurement. For further instructions on measuring the trapped field, see the the DAFI utility instructions to perform a field profile (see section "Measuring the Field Profile within the SRM" above).

Items needed for trapping a low field:

Fluxgate probe: Used to measure the field in the SQUID response region (Figure A1)
SRM nulling cable: Used to null the field inside the SQUID response region (Figure A2)
2G Enterprises Model 202 Control Monitor (Figure A3)
Model 581 C DC SQUID System Z axis SQUID box (Figure A4)
Oscilloscope: Used to monitor the signal and noise during field trapping
2 BNC cables
An empty section half boat
Small screw driver for adjusting the nulling coil potentiometers

Figure A1: Fluxgate magnetometer probe and control box

Figure A2: SRM nulling coil

Figure A3: Model 202 Control Monitor for SRM

Figure A4: Model 581 DC SQUID System box

Zeroing the Fluxgate

It may be necessary to zero the fluxgate before the field trapping procedure. Connect the fluxgate probe to the control box (Figure A1). Place the fluxgate at 295.7 cm in the SRM with MDrive Motion Utility. Perform a fine tuning (Figure A5 A.) by turning the "zero" potentiometer to have zero on the display. It may happen that coarse tuning is necessary if fine tuning is not enough. To conduct a coarse tuning, open the control box and move the screw of the blue components (one for each coil) (Figure A5 B.)

Figure A5: Zeroing the fluxgate by A) fine tuning or B) coarse tuning.

Trapping a Low Field

Position the fluxgate probe in the section half boat. Center the fluxgate in the bore (Figure A6 A.). Note the position of the fluxgate from zero.

a. It is recommended to center the fluxgate coils around 150 cm in the boat. It is also possible to center the fluxgate around 80 cm (Figure A6 B.)

Figure A6: Fluxgate Magnetometer probe positioned in the section half boat. Center the probe in the bore. A) Position of the coil center at 150 cm, B) Position of the coil center at 80 cm

b. Connect the fluxgate probe to the fluxgate control box. Turn on the box and put it in range 10 mOe for measurements within the SRM shielding (Figure A7 A.).

c. Connect the SQUID system boxes to the back of the fluxgate control box (Figure A7 B.)

Figure 7: Connecting the fluxgate probe to: A) the fluxgate box and B) SQUID systems

2. Connect the oscilloscope Aux IN to the SYNC on the Z axis SQUID box and connect oscilloscope Channel 1 to the AC Out on the back of the Z axis SQUID box. (Figure A8)

a. The axial field (along the Z axis) is the highest due to the orientation along the opening of the shielding, which makes the Z axis the best signal to monitor.

Figure A8: Back of the Z axis 581 DC SQUID Box. Connect AC Out (Blue box) to Channel 1 on the oscilloscope.

Connect SYNC (Red Box) to AUX IN on the oscilloscope.

3. Connect the nulling cable to the back of the Model 202 Control Monitor (Figure A9) and to the ports near the junction between the measurement region and the degauss region of the SRM (Figure A10). Connect the red plugs to the red terminals, black plugs to black terminals, matching the X, Y, and Z labels. The cables labeled “coil” will not be used.

Figure A9: Back of the Model 202 Control Monitor. Note the Nulling Coils Connector in the red box, and the rock mag port in the green box.

Figure A10: Nulling cable connection ports near the junction between the SQUID measurement region and the degaussing region of the SRM.

4. Connect the Model 202 Control Monitor Rock Mag port to the RS232 port on the cold head (Figure A11). The Rock Mag Port is used to connect the control box to the cold head and read the shield and SQUID temperatures. This cable is always connected to the control monitor, but must be left disconnected from the cold head when not in use. The RS232 cable is connected to the cold head when temperature readings are taken.

Figure A11: RS232 port on the Cryomech Cold head (yellow box).

5. Turn on the power to the Model 202 Control Monitor (Figure A12, green box). The display should include the current temperature of the shield (TSH) and the SQUIDS (TSQ). T2S will be open. No heaters should be on at this time (Figure A12).

Figure A12: Model 202 Control Monitor Display

6. Move the Fluxgate into the SRM using the motion utility or motion widget in the IMS SRM software (Figure A13). The center of the SQUIDS is located at 295.7 cm.

a. If you want to watch the trapped field during warming, move the Fluxgate magnetometer probe to a position 10 to 20 cm from the center of the SQUIDS. As the system warms, it will be possible to see the SQUID signal disappear on the oscilloscope.

b. If the fluxgate is centered in the SQUIDs, the SQUID signal will not be visible on the oscilloscope. The oscilloscope will only show noise.

Figure A13: IMS Motion Utility to move the Fluxgate into the SRM

7. Turn on the heaters by pressing the black buttons on the front of the Control Monitor (Figure A14).

a. The SQUID and STRIPLINE heaters will stay on once they are pressed until they are manually shut off by pressing the switch again (Figure A14, yellow box).

b. To turn on the SHIELD heater, press and hold the black button until the light above the switch illuminates (Figure A14, red box). The SHIELD heater will shut off periodically and light will turn off. Press the switch again to continue heating the system.

c. If you are monitoring the signal on the oscilloscope, the signal should become noisy/disappear after the temperatures reach 7 -8 K. Once the signal is gone, move the fluxgate magnetometer to the center of the SQUID response region.

d. To speed up the heating process, you may shut down the SRM Cryomech Compressor during heating. If the compressor is shut down, reduce the chill water flow to the compressor to prevent over cooling the oil in the compressor.

Figure A14: Model 202 Control Monitor with heaters on. The heater temperatures are now visible on the display.

8. Keep turning on the Shield heater after it shut off periodically while monitoring the TSH and TSQ temperatures. When TSH and TSQ are approximately 11-12 K, turn off all of the heaters.

9. Center the fluxgate magnetometer in the SQUIDS using the Motion Widget utility. The SQUIDS are 295.7 cm from the home switch.

10. If the compressor is off, turn it on and increase the water flow rate.

11. While monitoring the readouts on the fluxgate, use a small screw driver to turn the nulling coil potentiometers on the control monitor box (Figure A14, purple box). The nulling coil potentiometers (purple box) are used to null the field. Adjust the fluxgate readouts to as close to zero mOe as possible.

a. The nulling coil potentiometers do not correspond to the fluxgate axis. The X nulling pot adjusts the Y axis, the Y nulling pot adjusts the X axis, and the Z nulling pot adjusts the Z axis.

b. The values are in mOe so a value of 2.14 on the fluxgate in range 10 mOe is equal to 214 nT.

c. The X, Y, and Z readouts (Figure A15) correspond to the fluxgate magnetometer axes, not the SRM axes.

d. The Z axis readout is missing its decimal point. The decimal should be in the same position on each readout.

Figure A15: Fluxgate Magnetometer display during field nulling. This display currently reads 0.04, 0.00, and -0.02 mOe

on the X, Y, and Z fluxgate axis respectively. These values are equal to 4, 0, and -2 nT.

12. Continue monitoring the fields and the TSH and TSQ temperatures as the system cools down. Superconducting temperatures are around 7 K.

a. It is possible to continue adjusting the fields until the shield goes superconducting. It will be evident that the shield has gone superconducting when the adjustment of the nulling currents no longer has an effect on the field.

13. Once the system is superconducting, move the fluxgate 20 cm towards home. A clean signal should be visible on the oscilloscope.

You will notice some fluctuation on all axes, but the Z axis may show significant drift after trapping a new field. Allow the system to settle before taking any measurements. Use the fluxgate magnetometer and DAFI utility in the IMS SRM software to measure the trapped field across the SQUID centers once the system has settled (see section "Measuring the Field Profile within the SRM").

Appendix B: Mathematical Explanation of IMS- SRM

This document is intended as a brief explanation of the mathematical calculations done in the IMS-SRM program beginning with the initial SQUID meter readings and ending with the inclination, declination, and intensity values.

The values displayed and recorded directly from the SQUID meters are in units of Φ_0. The SQUID meters have two display options, analog or DVM, and counts. The combination of these two outputs results in the total signal, S_Φ0.

(1)

To convert S_Φ0to magnetic moment units,S_Φ0is multiplied by the system calibration constant in emu per flux quanta (emu/Φ). The calibration constant is specific to the axis on which the measurement was taken. To convert the magnetic moment from emu to Am², use the conversion factor of 10^-3.

(2)

The calibration constants for the IODP SRM are:

X= 8.1036E-5

Y= -8.2590E-5

Z=3.8825E-5

This magnetic moment value is written to the .csv file as the Meter valuenot directly recorded in the auxiliary backup csv file, but can be calculated.

To account for the initial offset in the SQUID readings at the time of the first measurement, the first drift value is subtracted from each measurement. This value is then recorded as the raw moment value (X-moment, Y-moment, Z-moment).

(3) Image Removed Image Added

The IODP and SRM instruments coordinates differ. To correct the data from instrument coordinates to the IODP coordinate system the sign of the Z axis is flipped immediately after the raw magnetic moment value is calculated. The . In order to calculate the background corrected moments, the background must be subtracted from the raw moment values before any matrix rotations are applied for working vs. archive section half or any related rotations for cubes. This process is covered later in this document.

The correction for working vs. archive half or any related rotations for cubes are then applied to the raw moments . This (i.e. no background correction) as well as the background corrected moments (M_BC). This is accomplished through matrix rotations. The raw magnetic moment values are then corrected for response length of the individual The matrix rotations are applied to the Z-axis first, followed by the X-axis, then the Y-axis. The magnetic moment values for section halves are then corrected for response length of the individual SQUID axis and for the cross sectional area of the core. The resulting value is the volume corrected magnetization, Mv (eq. 4a). Discrete samples are handled slightly differently. The volume corrected magnetization is calculated by dividing the magnetic moment values by the reported sample volume in IMS (eq. 4b).

The raw magnetic moment values are then corrected for response length of the individual SQUID axis and for the sample volume. The resulting value is the volume corrected magnetization, M_v.

(44a) Image Removed Image Added

(4b) Image Added

*Note that the division by 100³is a conversion from cm³to m³.

The squid lengths for the IODP SRM are:

X= 7.3 cm

Y= 7.3 cm

Z=9.0 cm

The Inclination, Declination, and Intensity values are calculated from the volume corrected magnetization values. The inclination and declination values are given in degrees while the intensity values are reported in A/m.

(5)

(6)

(7)

Each of these values is reported as the raw values in the data files. IODP also reports inclination, declination, and intensity values corrected for drift, background, and for both background and drift.

Drift Correction Process:

This section describes

Correcting for Background and Drift

The calculations described above are for the uncorrected inclination, declination, and intensity values. The following section describes how to calculate the background corrected and drift corrected inclination, declination, and intensity.

Background Correction Process:

This section covers the process for correcting the magnetic moment data for the instrument background. The background measurement is an empty tray measurement taken prior to sample measurements resulting in the raw background moments (Moment_bkgnd). The same background data will be applied until a new measurement is initiated by the user. The background moments are corrected to convert from instruments coordinates to the IODP coordinate system by flipping the sign of the Z-axis immediately after the raw magnetic moment value is calculated. This is the only coordinate system correction that the background data undergoes (i.e. there are no rotations for working vs archive nor for cube orientation).

The moments measured along the empty sample tray (Moment_bkgd) are subtracted from the measured moments along the core at the same position, resulting in the background corrected moment, Moment_BC. The moment values used here are those calculated in equation 3 (not the volume corrected moments).

(8) Image Added

The Moment_BC value is then volume corrected (see formula 4a or 4b).

The corrected moments are then input into formulas 5, 6, and 7 to calculate the background corrected directions and intensities for each measurement. These values are then output to the data files (.srm and .csv).

Drift Correction Process:

This section describes the steps taken to correct the magnetic data for instrument drift.

First, the rate of drift over the measurement time is calculated using the moments and measurement times for the drift 1 and drift 2 measurements. The drift 1 measurement is taken when the top of the tray it at 326 cm from the home position and drift 2 is taken when the top of the tray is 106 cm from the home position.

(89) Image Removed Image Added

Next, the amount of drift between the first drift measurement and the individual sample measurement is calculated. Linear drift is assumed.

(910) Image Removed Image Added

Finally, the amount of drift is removed from the raw moment value, resulting in the drift corrected moment, M_DC.

(10) Image Removed

Background Correction Process:

This section covers the process for correcting the volume corrected magnetic moment data for the instrument background. The background measurement is an empty tray measurement taken prior to sample measurements. The same background data will be applied until a new measurement is initiated by the user.

The moments measured along the empty sample tray (Moment_bkgd) are subtracted from the measured moments along the core at the same positiondrift is removed from the raw moment value, resulting in the background drift corrected moment, M_BCMoment_DC.

(11) Image Removed ) Image Added

The Moment_DC value is then volume corrected (see formula 4a or 4b).

The corrected moments are then input into formulas 5, 6, and 7 to calculate the drift corrected directions and intensities for each measurement. These values are then output to the data files (.srm and .csv).

Background and Drift Correction Process:

This section describes the process for correcting the magnetic moment data for both instrument background and drift.

To calculate the drift corrected background moments, Moment_bkgdDC , the drift corrected moment is subtracted from the background moment.

The drift corrected background moments, Moment_bkgd _bkgdDC are removed from the previously calculated drift corrected moments, resulting in the background and drift corrected moment, M_BDC.

(12) Image Removed Image Added

The Moment_DBC value is then volume corrected (see formula 4a or 4b).

The corrected moments are then input into formulas 5, 6, and 7 to calculate the background and drift corrected directions and intensities for each measurement. These values are then output to the data files (.srm and .csv).

LIMS Component Table

(edits in progress)

SRM Expanded Report
ANALYSIS TABLE NAME ABOUT TEXT
SRM SAMPLE Exp Exp: expedition number
SRM SAMPLE Site Site: site number
SRM SAMPLE Hole Hole: hole number
SRM SAMPLE Core Core: core number
SRM SAMPLE Type Type: type indicates the coring tool used to recover the core (typical types are F, H, R, X).
SRM SAMPLE Sect Sect: section number
SRM SAMPLE A/W A/W: archive (A) or working (W) section half.
SRM SAMPLE text_id Text_ID: automatically generated database identifier for a sample, also carried on the printed labels. This identifier is guaranteed to be unique across all samples.
SRM SAMPLE sample_number Sample Number: automatically generated database identifier for a sample. This is the primary key of the SAMPLE table.
SRM SAMPLE label_id Label identifier: automatically generated, human readable name for a sample that is printed on labels. This name is not guaranteed unique across all samples.
SRM SAMPLE sample_name Sample name: short name that may be specified for a sample. You can use an advanced filter to narrow your search by this parameter.
SRM SAMPLE x_sample_state Sample state: Single-character identifier always set to "W" for samples; standards can vary.
SRM SAMPLE x_project Project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises
SRM SAMPLE x_capt_loc Captured location: "captured location," this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2
SRM SAMPLE location Location: location that sample was taken; this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2
SRM SAMPLE x_sampling_tool Sampling tool: sampling tool used to take the sample (e.g., syringe, spatula)
SRM SAMPLE changed_by Changed by: username of account used to make a change to a sample record
SRM SAMPLE changed_on Changed on: date/time stamp for change made to a sample record
SRM SAMPLE sample_type Sample type: type of sample from a predefined list (e.g., HOLE, CORE, LIQ)
SRM SAMPLE x_offset Offset (m): top offset of sample from top of parent sample, expressed in meters.
SRM SAMPLE x_offset_cm Offset (cm): top offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset, converted to cm)
SRM SAMPLE x_bottom_offset_cm Bottom offset (cm): bottom offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset + length, converted to cm)
SRM SAMPLE x_diameter Diameter (cm): diameter of sample, usually applied only to CORE, SECT, SHLF, and WRND samples; however this field is null on both Exp. 390 and 393, so it is no longer populated by Sample Master
SRM SAMPLE x_orig_len Original length (m): field for the original length of a sample; not always (or reliably) populated
SRM SAMPLE x_length Length (m): field for the length of a sample [as entered upon creation]
SRM SAMPLE x_length_cm Length (cm): field for the length of a sample. This is a calculated field (length, converted to cm).
SRM SAMPLE status Status: single-character code for the current status of a sample (e.g., active, canceled)
SRM SAMPLE old_status Old status: single-character code for the previous status of a sample; used by the LIME program to restore a canceled sample
SRM SAMPLE original_sample Original sample: field tying a sample below the CORE level to its parent HOLE sample
SRM SAMPLE parent_sample Parent sample: the sample from which this sample was taken (e.g., for PWDR samples, this might be a SHLF or possibly another PWDR)
SRM SAMPLE standard Standard: T/F field to differentiate between samples (standard=F) and QAQC standards (standard=T)
SRM SAMPLE login_by Login by: username of account used to create the sample (can be the LIMS itself [e.g., SHLFs created when a SECT is created])
SRM SAMPLE sampled_date Sampled date: creation date of the sample
SRM SAMPLE legacy Legacy flag: T/F indicator for when a sample is from a previous expedition and is locked/uneditable on this expedition
SRM TEST test changed_on TEST changed on: date/time stamp for a change to a test record.
SRM TEST test date_started TEST date started: date/time stamp for when a test is started.
SRM TEST test status TEST status: single-character code for the current status of a test (e.g., active, in process, canceled)
SRM TEST test old_status TEST old status: single-character code for the previous status of a test; used by the LIME program to restore a canceled test
SRM TEST test test_number TEST test number: automatically generated database identifier for a test record. This is the primary key of the TEST table.
SRM TEST test date_received TEST date received: date/time stamp for the creation of the test record.
SRM TEST test instrument TEST instrument [instrument group]: field that describes the instrument group (most often this applies to loggers with multiple sensors); often obscure (e.g., user_input)
SRM TEST test analysis TEST analysis: analysis code associated with this test (foreign key to the ANALYSIS table)
SRM TEST test x_project TEST project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises
SRM TEST test sample_number TEST sample number: the sample_number of the sample to which this test record is attached; a foreign key to the SAMPLE table
SRM CALCULATED Sample Top depth CSF-A (m) Top depth CSF-A (m): position of observation expressed relative to the top of the hole.
SRM CALCULATED Sample Bottom depth CSF-A (m) Bottom depth CSF-A (m): position of observation expressed relative to the top of the hole.
SRM CALCULATED Sample Top depth CSF-B (m) Top depth CSF-B (m): position of observation expressed relative to the top of the hole. Does not allow section overlap.
SRM CALCULATED Sample Bottom depth CSF-B (m) Bottom depth CSF-B (m): position of observation expressed relative to the top of the hole. Does not allow section overlap.
SRM RESULT offset depth CSF-A (cm) Top offset (cm): position of the measurement expressed in cm from top of section
SRM RESULT offset depth CSF-B (cm) Top offset (cm): position of the measurement expressed in cm from top of section
SRM RESULT daq_interval (cm) RESULT interval (cm): the measurement interval that a section was measured with
SRM RESULT daq_iterations RESULT iteration: the number of iterations (repeated measurements) a section was measured at a given offset
SRM RESULT data_type RESULT data type: to differentiate between samples and standards
SRM RESULT declination_w_raw (deg) RESULT declination_w_raw (deg.): declination computed from magnetic moment data
SRM RESULT declination_w_bkgrd (deg) RESULT declination_w_bkgrd (deg): declination computed with background (tray) correction
SRM RESULT declination_w_drift (deg) RESULT declination_w_drift (deg): declination computed with drift correction
SRM RESULT declination_w_bkgrd_w_drift (deg) RESULT declination_w_bkgrd_w_drift (deg): declination computed with background (tray) and drift correction
SRM RESULT inclination_w_raw (deg) RESULT inclination_w_raw (deg): inclination computed from magnetic moment data
SRM RESULT inclination_w_bkgrd (deg) RESULT inclination_w_bkgrd (deg): inclination computed with background (tray) correction
SRM RESULT inclination_w_drift (deg) RESULT inclination_w_drift (deg): inclination computed with drift correction
SRM RESULT inclination_w_bkgrd_w_drift (deg) RESULT inclination_w_bkgrd_w_drift (deg): inclination computed with background (tray) and drift correction
SRM RESULT intensity_w_raw (A/m) RESULT intensity_w_raw (A/m): intensity computed from magnetic moment data
SRM RESULT intensity_w_bkgrd (A/m) RESULT intensity_w_bkgrd (A/m): intensity computed with background (tray) correction
SRM RESULT intensity_w_drift (A/m) RESULT intensity_w_drift (A/m): intensity computed with drift correction
SRM RESULT intensity_w_bkgrd_w_drift (A/m) RESULT intensity_w_bkgrd_w_drift (A/m): intensity computed with background (tray) and drift correction
SRM RESULT leader-trailer_length (cm) RESULT leader-trailer_length (cm): the distance in centimeters before and after a section to measure for deconvolution processing (usually set at 6 cm)
SRM RESULT measurement_type RESULT measurement_type: type of measurement (e.g., SECTION, DISCRETE)
SRM RESULT observed_length (cm) RESULT observed_length (cm): length of a section analyzed with the SRM as computed in LORE
SRM RESULT offset (cm) RESULT offset (cm): position in centimeters of the observation made, measured relative to the top of a section half.
SRM RESULT run_asman_id RESULT run ASMAN_ID: serial number of the ASMAN link for the run file
SRM RESULT run_filename RESULT run filename: file name of the run file
SRM RESULT file_configuration_asman_id RESULT file_configuration_ASMAN_ID: serial number of the ASMAN link for the SRM configuration file
SRM RESULT file_configuration_filename RESULT file_configuration filename: file name of the SRM configuration file
SRM RESULT file_raw__asman_id RESULT file_raw ASMAN_ID: serial number of the ASMAN link for the CSV data file
SRM RESULT file_raw__filename RESULT file_raw filename: file name of the CSV data file
SRM RESULT file_srm_discrete_bkgnd_asman_id RESULT file_srm_discrete_bkgnd ASMAN_ID: serial number of the ASMAN link for the SRM discrete tray background
SRM RESULT file_srm_discrete_bkgnd_filename RESULT file_srm_discrete_bkgnd filename: file name of the SRM discrete tray background file
SRM RESULT file_srm_section_bkgnd_asman_id RESULT file_srm_section_bkgnd ASMAN_ID: serial number of the ASMAN link for the SRM section tray background
SRM RESULT file_srm_section_bkgnd_filename RESULT file_srm_section_bkgnd filename: file name of the SRM section tray background file
SRM RESULT file_srm_sequence_asman_id RESULT file_srm_sequence ASMAN_ID: serial number of the ASMAN link for the SRM measurement sequence
SRM RESULT file_srm_sequence_filename RESULT file_srm_sequence filename: file name of the SRM measurement sequence file
SRM RESULT sample_area (cm²) RESULT sample_area: sample area of the analyzed sample (e.g., 17.5 cm2 for APC core)
SRM RESULT sample_orientation RESULT sample_orientation: sample orientation with respect to the SRM when one looks toward the entrance of the SRM (e.g., section half: archive).
SRM RESULT sample_shape RESULT sample_shape: shape of a sample from a predefined list (HRND)
SRM RESULT transform_matrix RESULT transform_matrix: transform matrix used by IMS to calculate moments to match IODP orientation conventions (default is archive orientation)
SRM RESULT transform_comment RESULT transform_comment: comment on the transform matrix used in the calculation. None refers to no transform matrix applied (archive orientation).
SRM RESULT treatment_type
RESULT treatment_type: refers to type of remanent magnetization measured. Default is natural remanent magnetization (NRM). IN-LINE AF DEMAG refers to AF demagnetization performed with the SRM.
SRM RESULT treatment_value
RESULT treatment_value: value of in-line treatment that was applied to the section being measured (e.g., 0 for NRM, 10 for AF demagnetization at 10 mT).
SRM RESULT meas_time RESULT meas_time: time of the measurement in digits
SRM RESULT x_meas_moment (Am²)
RESULT x_meas_moment (Am²): raw magnetic moment data from SQUID x-axis, with sign corrected to match IODP orientation conventions.
SRM RESULT x_stdev (Am²) RESULT x_stdev (Am²): standard deviation of magnetic moments (x-axis) for repeated measurements at a given position
SRM RESULT y_meas_moment (Am²) RESULT y_meas_moment (Am²): magnetic moment raw data from SQUID y-axis, with sign corrected to match IODP orientation conventions.
SRM RESULT y_stdev (Am²)
RESULT y_stdev (Am²): standard deviation of magnetic moments (y-axis) for repeated measurements at a given position
SRM RESULT z_meas_moment (Am²) RESULT z_meas_moment (Am²): magnetic moment raw data from SQUID z-axis, with sign corrected to match IODP orientation conventions
SRM RESULT z_stdev (Am²) RESULT z_stdev (Am²): standard deviation of magnetic moments (z-axis) for repeated measurements at a given position
SRM RESULT tray_position RESULT tray_position: position (offset in cm) on the discrete boat a sample is at.
SRM SAMPLE sample description SAMPLE comment: contents of the SAMPLE.description field, usually shown on reports as "Sample comments"
SRM TEST test test_comment TEST comment: contents of the TEST.comment field, usually shown on reports as "Test comments"
SRM RESULT result comments RESULT comment: contents of a result parameter with name = "comment," usually shown on reports as "Result comments"

Author(s):	Beth Novak
Reviewer(s):	Bill Mills, Katerina Petronotis
Editor(s):
Supervisor Approval (Name, Title, Date):
Audience:	Laboratory Specialists
Origination date:	2016
Current version:	November 26, 2018
Domain:	Paleomagnetics Lab
System:	SRM

ANALYSIS	TABLE	NAME	ABOUT TEXT
SRM	SAMPLE	Exp	Exp: expedition number
SRM	SAMPLE	Site	Site: site number
SRM	SAMPLE	Hole	Hole: hole number
SRM	SAMPLE	Core	Core: core number
SRM	SAMPLE	Type	Type: type indicates the coring tool used to recover the core (typical types are F, H, R, X).
SRM	SAMPLE	Sect	Sect: section number
SRM	SAMPLE	A/W	A/W: archive (A) or working (W) section half.
SRM	SAMPLE	text_id	Text_ID: automatically generated database identifier for a sample, also carried on the printed labels. This identifier is guaranteed to be unique across all samples.
SRM	SAMPLE	sample_number	Sample Number: automatically generated database identifier for a sample. This is the primary key of the SAMPLE table.
SRM	SAMPLE	label_id	Label identifier: automatically generated, human readable name for a sample that is printed on labels. This name is not guaranteed unique across all samples.
SRM	SAMPLE	sample_name	Sample name: short name that may be specified for a sample. You can use an advanced filter to narrow your search by this parameter.
SRM	SAMPLE	x_sample_state	Sample state: Single-character identifier always set to "W" for samples; standards can vary.
SRM	SAMPLE	x_project	Project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises
SRM	SAMPLE	x_capt_loc	Captured location: "captured location," this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2
SRM	SAMPLE	location	Location: location that sample was taken; this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2
SRM	SAMPLE	x_sampling_tool	Sampling tool: sampling tool used to take the sample (e.g., syringe, spatula)
SRM	SAMPLE	changed_by	Changed by: username of account used to make a change to a sample record
SRM	SAMPLE	changed_on	Changed on: date/time stamp for change made to a sample record
SRM	SAMPLE	sample_type	Sample type: type of sample from a predefined list (e.g., HOLE, CORE, LIQ)
SRM	SAMPLE	x_offset	Offset (m): top offset of sample from top of parent sample, expressed in meters.
SRM	SAMPLE	x_offset_cm	Offset (cm): top offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset, converted to cm)
SRM	SAMPLE	x_bottom_offset_cm	Bottom offset (cm): bottom offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset + length, converted to cm)
SRM	SAMPLE	x_diameter	Diameter (cm): diameter of sample, usually applied only to CORE, SECT, SHLF, and WRND samples; however this field is null on both Exp. 390 and 393, so it is no longer populated by Sample Master
SRM	SAMPLE	x_orig_len	Original length (m): field for the original length of a sample; not always (or reliably) populated
SRM	SAMPLE	x_length	Length (m): field for the length of a sample [as entered upon creation]
SRM	SAMPLE	x_length_cm	Length (cm): field for the length of a sample. This is a calculated field (length, converted to cm).
SRM	SAMPLE	status	Status: single-character code for the current status of a sample (e.g., active, canceled)
SRM	SAMPLE	old_status	Old status: single-character code for the previous status of a sample; used by the LIME program to restore a canceled sample
SRM	SAMPLE	original_sample	Original sample: field tying a sample below the CORE level to its parent HOLE sample
SRM	SAMPLE	parent_sample	Parent sample: the sample from which this sample was taken (e.g., for PWDR samples, this might be a SHLF or possibly another PWDR)
SRM	SAMPLE	standard	Standard: T/F field to differentiate between samples (standard=F) and QAQC standards (standard=T)
SRM	SAMPLE	login_by	Login by: username of account used to create the sample (can be the LIMS itself [e.g., SHLFs created when a SECT is created])
SRM	SAMPLE	sampled_date	Sampled date: creation date of the sample
SRM	SAMPLE	legacy	Legacy flag: T/F indicator for when a sample is from a previous expedition and is locked/uneditable on this expedition
SRM	TEST	test changed_on	TEST changed on: date/time stamp for a change to a test record.
SRM	TEST	test date_started	TEST date started: date/time stamp for when a test is started.
SRM	TEST	test status	TEST status: single-character code for the current status of a test (e.g., active, in process, canceled)
SRM	TEST	test old_status	TEST old status: single-character code for the previous status of a test; used by the LIME program to restore a canceled test
SRM	TEST	test test_number	TEST test number: automatically generated database identifier for a test record. This is the primary key of the TEST table.
SRM	TEST	test date_received	TEST date received: date/time stamp for the creation of the test record.
SRM	TEST	test instrument	TEST instrument [instrument group]: field that describes the instrument group (most often this applies to loggers with multiple sensors); often obscure (e.g., user_input)
SRM	TEST	test analysis	TEST analysis: analysis code associated with this test (foreign key to the ANALYSIS table)
SRM	TEST	test x_project	TEST project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises
SRM	TEST	test sample_number	TEST sample number: the sample_number of the sample to which this test record is attached; a foreign key to the SAMPLE table
SRM	CALCULATED	Sample Top depth CSF-A (m)	Top depth CSF-A (m): position of observation expressed relative to the top of the hole.
SRM	CALCULATED	Sample Bottom depth CSF-A (m)	Bottom depth CSF-A (m): position of observation expressed relative to the top of the hole.
SRM	CALCULATED	Sample Top depth CSF-B (m)	Top depth CSF-B (m): position of observation expressed relative to the top of the hole. Does not allow section overlap.
SRM	CALCULATED	Sample Bottom depth CSF-B (m)	Bottom depth CSF-B (m): position of observation expressed relative to the top of the hole. Does not allow section overlap.
SRM	RESULT	offset depth CSF-A (cm)	Top offset (cm): position of the measurement expressed in cm from top of section
SRM	RESULT	offset depth CSF-B (cm)	Top offset (cm): position of the measurement expressed in cm from top of section
SRM	RESULT	daq_interval (cm)	RESULT interval (cm): the measurement interval that a section was measured with
SRM	RESULT	daq_iterations	RESULT iteration: the number of iterations (repeated measurements) a section was measured at a given offset
SRM	RESULT	data_type	RESULT data type: to differentiate between samples and standards
SRM	RESULT	declination_w_raw (deg)	RESULT declination_w_raw (deg.): declination computed from magnetic moment data
SRM	RESULT	declination_w_bkgrd (deg)	RESULT declination_w_bkgrd (deg): declination computed with background (tray) correction
SRM	RESULT	declination_w_drift (deg)	RESULT declination_w_drift (deg): declination computed with drift correction
SRM	RESULT	declination_w_bkgrd_w_drift (deg)	RESULT declination_w_bkgrd_w_drift (deg): declination computed with background (tray) and drift correction
SRM	RESULT	inclination_w_raw (deg)	RESULT inclination_w_raw (deg): inclination computed from magnetic moment data
SRM	RESULT	inclination_w_bkgrd (deg)	RESULT inclination_w_bkgrd (deg): inclination computed with background (tray) correction
SRM	RESULT	inclination_w_drift (deg)	RESULT inclination_w_drift (deg): inclination computed with drift correction
SRM	RESULT	inclination_w_bkgrd_w_drift (deg)	RESULT inclination_w_bkgrd_w_drift (deg): inclination computed with background (tray) and drift correction
SRM	RESULT	intensity_w_raw (A/m)	RESULT intensity_w_raw (A/m): intensity computed from magnetic moment data
SRM	RESULT	intensity_w_bkgrd (A/m)	RESULT intensity_w_bkgrd (A/m): intensity computed with background (tray) correction
SRM	RESULT	intensity_w_drift (A/m)	RESULT intensity_w_drift (A/m): intensity computed with drift correction
SRM	RESULT	intensity_w_bkgrd_w_drift (A/m)	RESULT intensity_w_bkgrd_w_drift (A/m): intensity computed with background (tray) and drift correction
SRM	RESULT	leader-trailer_length (cm)	RESULT leader-trailer_length (cm): the distance in centimeters before and after a section to measure for deconvolution processing (usually set at 6 cm)
SRM	RESULT	measurement_type	RESULT measurement_type: type of measurement (e.g., SECTION, DISCRETE)
SRM	RESULT	observed_length (cm)	RESULT observed_length (cm): length of a section analyzed with the SRM as computed in LORE
SRM	RESULT	offset (cm)	RESULT offset (cm): position in centimeters of the observation made, measured relative to the top of a section half.
SRM	RESULT	run_asman_id	RESULT run ASMAN_ID: serial number of the ASMAN link for the run file
SRM	RESULT	run_filename	RESULT run filename: file name of the run file
SRM	RESULT	file_configuration_asman_id	RESULT file_configuration_ASMAN_ID: serial number of the ASMAN link for the SRM configuration file
SRM	RESULT	file_configuration_filename	RESULT file_configuration filename: file name of the SRM configuration file
SRM	RESULT	file_raw__asman_id	RESULT file_raw ASMAN_ID: serial number of the ASMAN link for the CSV data file
SRM	RESULT	file_raw__filename	RESULT file_raw filename: file name of the CSV data file
SRM	RESULT	file_srm_discrete_bkgnd_asman_id	RESULT file_srm_discrete_bkgnd ASMAN_ID: serial number of the ASMAN link for the SRM discrete tray background
SRM	RESULT	file_srm_discrete_bkgnd_filename	RESULT file_srm_discrete_bkgnd filename: file name of the SRM discrete tray background file
SRM	RESULT	file_srm_section_bkgnd_asman_id	RESULT file_srm_section_bkgnd ASMAN_ID: serial number of the ASMAN link for the SRM section tray background
SRM	RESULT	file_srm_section_bkgnd_filename	RESULT file_srm_section_bkgnd filename: file name of the SRM section tray background file
SRM	RESULT	file_srm_sequence_asman_id	RESULT file_srm_sequence ASMAN_ID: serial number of the ASMAN link for the SRM measurement sequence
SRM	RESULT	file_srm_sequence_filename	RESULT file_srm_sequence filename: file name of the SRM measurement sequence file
SRM	RESULT	sample_area (cm²)	RESULT sample_area: sample area of the analyzed sample (e.g., 17.5 cm2 for APC core)
SRM	RESULT	sample_orientation	RESULT sample_orientation: sample orientation with respect to the SRM when one looks toward the entrance of the SRM (e.g., section half: archive).
SRM	RESULT	sample_shape	RESULT sample_shape: shape of a sample from a predefined list (HRND)
SRM	RESULT	transform_matrix	RESULT transform_matrix: transform matrix used by IMS to calculate moments to match IODP orientation conventions (default is archive orientation)
SRM	RESULT	transform_comment	RESULT transform_comment: comment on the transform matrix used in the calculation. None refers to no transform matrix applied (archive orientation).
SRM	RESULT	treatment_type	RESULT treatment_type: refers to type of remanent magnetization measured. Default is natural remanent magnetization (NRM). IN-LINE AF DEMAG refers to AF demagnetization performed with the SRM.
SRM	RESULT	treatment_value	RESULT treatment_value: value of in-line treatment that was applied to the section being measured (e.g., 0 for NRM, 10 for AF demagnetization at 10 mT).
SRM	RESULT	meas_time	RESULT meas_time: time of the measurement in digits
SRM	RESULT	x_meas_moment (Am²)	RESULT x_meas_moment (Am²): raw magnetic moment data from SQUID x-axis, with sign corrected to match IODP orientation conventions.
SRM	RESULT	x_stdev (Am²)	RESULT x_stdev (Am²): standard deviation of magnetic moments (x-axis) for repeated measurements at a given position
SRM	RESULT	y_meas_moment (Am²)	RESULT y_meas_moment (Am²): magnetic moment raw data from SQUID y-axis, with sign corrected to match IODP orientation conventions.
SRM	RESULT	y_stdev (Am²)	RESULT y_stdev (Am²): standard deviation of magnetic moments (y-axis) for repeated measurements at a given position
SRM	RESULT	z_meas_moment (Am²)	RESULT z_meas_moment (Am²): magnetic moment raw data from SQUID z-axis, with sign corrected to match IODP orientation conventions
SRM	RESULT	z_stdev (Am²)	RESULT z_stdev (Am²): standard deviation of magnetic moments (z-axis) for repeated measurements at a given position
SRM	RESULT	tray_position	RESULT tray_position: position (offset in cm) on the discrete boat a sample is at.
SRM	SAMPLE	sample description	SAMPLE comment: contents of the SAMPLE.description field, usually shown on reports as "Sample comments"
SRM	TEST	test test_comment	TEST comment: contents of the TEST.comment field, usually shown on reports as "Test comments"
SRM	RESULT	result comments	RESULT comment: contents of a result parameter with name = "comment," usually shown on reports as "Result comments"

Page Comparison

Versions Compared

Old Version 74

New Version Current

Key

Table of Contents:

Launching the IMS-SRM application

Initial Instrument Setup

SRM Configuration

SRM Instrument General Setup

Degauss and Drift Locations Track Setup

Setting Up for a Measurement

Setting the Measurement Parameters

Measuring Tray Backgrounds

To measure the background of a section or discrete tray:

Defining the Sample Presets

Create Sample Presets

Save the Sample Preset

To clear a preset

Starting Measurements

Sample Information Window

Sample Entry Tabs

Measurement Sequence Tab

Section Half Sample Entry

Discrete Sample Entry

Offline treatment

Other features

Sample Entry Caveats

During a Measurement

Active Display

Emergency Procedures

SRM Software Abort Button

SRM Hardware Abort buttons

Ramp Down Now

Loss of Ship’s Chill Water

Special Features

Pause and Confirm

MagSpy Data Visualization Program

LIMS Filter

Utilities

Time Series Utility

DAFI Utility

U-Turn Utility

USB6008 Utility

Degauss Utility

Get Status can be pressed while the system is ramped up or down. If the status window appears blank, try again. The system may have been between commands when the Get Status command was sent.

The value behind the letter A is the field the degausser is at in Gauss.

The letter following the C is the active coil.

See the degausser vendor manual for further details on what the values in the status window mean.

Data Upload Files

Sections

Discrete

Auxiliary Files

Sections

Discrete

Background Files

Sections

Discrete

Measurement Sequence File

SRM Configuration File

Motion Control Setup:

Motor and Track Options menu

Fixed Positions menu

Limit and Home Switches Window

Motion Profiles

SRM Communications and Control Setup (SQUID, Degauss Controller, and USB 6008)

The technician should fully understand how to use this information present in the following sections as it is critical to setup the hardware and communicate with the SRM.

MAX Configuration Report and VISA Alias(es)

Device Specific Port Details (baud, parity, etc)

NI USB-6008 "DAFFI"

NI USB-232 Interface “RS-232 SN:00DCEFBB"

ASRL5::INSTR "CRYOMECH"

NI USB-232/4 Interface "RS-232 SN:01A6252E"

1: ASRL7::INSTR "X-SQUID"

2: ASRL7::INSTR "Y-SQUID"

3: ASRL10::INSTR "Z-SQUID"

4: ASRL9::INSTR "DEGAUSS"

NI USB-485 Interface "RS-485 SN:00DCDFE3"

ASRL6::INSTR "X-AXIS"

SRM Maintenance Procedures