FlashEA 1112 Elemental Analyzer (CHNS)

Introduction

Carbon, hydrogen, nitrogen, and sulfur (CHNS) are fundamental elemental components that are analyzed on the ship during IODP expeditions. Fluctuations in the concentration and/or content ratio of carbon, nitrogen, and sulfur define the origin, depositional environment, and diagenetic alteration of source materials. A few options for sample preparation method, instrument settings, and measurement methodology exist. In addition to the pre-generated methods, specific analytical methodology may be required based on the nature of certain sample materials. In this case, new methods will be created by the laboratory technicians working in conjunction with the scientists. Each instrument method is recorded by the USIO and will be associated with the measurements performed under that method.

Carbon Analysis

Most marine sediments and sedimentary rocks contain both carbonate ("inorganic") carbon and organic carbon. The CHNS procedure measures total carbon (inorganic plus organic) when following the standard method. Organic carbon content is then determined by using the inorganic carbon value from coulometric analysis and calculating the difference between total carbon from CHNS analysis and inorganic carbon analyzed by coulometer. Alternative methodologies can be employed to measure organic and inorganic carbon.

Nitrogen Analysis

Nitrogen is one of the important limiting nutrients in the ocean. The global carbon cycle and, consequently, atmospheric CO₂ might be tightly coupled to the nitrogen cycle, and therefore changes in the magnitude of the sinks and sources of fixed nitrogen in the oceans can significantly influence global climate. Biological nitrogen fixation, denitrification, and consumption of nitrate by phytoplankton are the major biological processes of the global nitrogen cycle. Changes in ocean circulation and nutrient supply, which occur in response to changes in environmental conditions, affect the relative importance and spatial extent of the major pathways of the nitrogen cycle.

Carbon-Nitrogen Relationship

C-N signatures indicate diagenesis and changes in productivity in seafloor sediments. Diagenesis may cause a decrease in C/N with decoupled C-N concentration variations, whereas productivity changes tend to produce C-N covariance in concentrations at relatively constant C/N ratios. Without significant superimposed diagenetic effects, linear relationships between C and N compositions can in some cases be interpreted as reflecting sources of organic matter:

• C/N = 6–8: fresh marine organic matter
• C/N = 8–20: degraded marine organic matter
• C/N > 20: continental organic matter

Low C/N values occur in sediment that is poor in organic carbon; these values may be biased by the tendency of clay minerals to absorb ammonium ions generated during the degradation of organic matter. Sediments rich in TOC have higher C/N values than sediments lean in TOC. C/N values that are elevated above algal values are common in organic carbon-rich marine sediments. These values evidently result from the selective loss of nitrogen as organic matter settles from the photic zone because nitrogen-bearing proteins are more labile than other organic matter components such as carbohydrates and lipids. This type of preferential nitrogen depletion and consequent carbon enrichment is recognized in organic carbon-rich sediments. C/N elevations are most pronounced when TOC concentrations are highest, suggesting that a higher rate of organic matter delivery leads to diminished organic matter degradation.

Sulfur Analysis

Cycling of sulfur compounds is a ubiquitous process in marine sediments that supports a range of microbial metabolic strategies. The occurrence of sulfur over a wide range of oxidation states (–2 to +6) allows sulfur species to serve as both electron acceptors and electron donors. In reduced form as sulfide (H₂S = H₂S_(aq) + HS^–), sulfur is also an important sink for reactive iron. The reduction of sulfate to sulfide is by far the most important pathway for sedimentary organic matter oxidation in anoxic marine sediments, and there is evidence that anaerobic oxidation of methane controls microbial sulfate reduction (MSR) in many marine systems.
Much of the sulfide produced during dissimilatory MSR in marine sediments is oxidized back to sulfate by a variety of biological and abiotic pathways, and sulfate produced by oxidation of sulfide may have variable isotope values reflecting the nature and complexity of the abiotic and biological oxidation pathways and relative contributions from different oxidants. These pathways often include the production of intermediate sulfur species such as elemental sulfur and thiosulfate, which can undergo further bacterial disproportionation reactions that may lead to further fractionations of both sulfur and oxygen isotopes in secondary sulfate.
Elemental sulfur is a possible intermediate in pyrite formation and may serve as an indicator for active SO₄ reduction. Elemental sulfur enrichments may form at places where the sulfide concentrations were high, resulting from in situ SO₄^2– reduction. Elemental sulfur forms from partial oxidation of sulfide. In addition, low-molecular-weight organic sulfur compounds are included in elemental sulfur.

Sulfur-Carbon Relationship

In normal marine sediments the relation between sulfur and carbon contents has a slope of 1/2.8 (S_tot/C_org ratio, wt%/wt%) and passes through the origin (assuming that sulfur fractions other than reduced sulfur are relatively negligible). In euxinic marine environments, however, sulfide is omnipresent (independent of local C_org contents) and iron sulfide formation can take place in the water column or at the sediment/water interface.
In addition, even slowly reacting iron compounds may react with sulfide in euxinic environments. Consequently, positive intercepts on the sulfur axis are obtained in sulfur vs. carbon plots for euxinic sediments, and only weak correlations may be observed. Additionally, post-depositional sulfidization of C_org-poor sediments may result in extremely high sulfur/carbon ratios.

Theory of Operation

Dried and powdered samples are combusted in a tin sample crucible with vanadium pentoxide catalyst, purified by a reactor packed with electrolytic copper and copper oxide, separated on a gas chromatographic column, and analyzed using a thermal conductivity detector (TCD). Addition of the V₂O₅ ensures complete conversion of inorganic sulfur in the sample to sulfur dioxide.
When the tin crucible with sample is dropped into the reactor, the oxygen environment triggers a strong exothermic reaction. Temperature rises to 1800°C, causing the sample to combust. The combustion products are conveyed across the reactor, where oxidation is completed. Nitrogen oxides and sulfur trioxide are reduced to elemental nitrogen and sulfur dioxide, and oxygen excess is retained. The gas mixture containing N₂, CO₂, H₂O, and SO₂ flows into the chromatographic column, where separation takes place. Eluted gases are sent to the TCD where electrical signals processed by the Eager 300 software provide percentages of nitrogen, carbon, hydrogen, and sulfur contained in the sample.

Worklist Generator

Use the Worklist Generator application to identify the samples, weighed on the Cahn balance, to be run on the CHNS Analyzer. Go through the samples very carefully. Look for missing container numbers, duplicate container numbers, duplicate entries and anything out of ordinary. Get everything perfect and ready to run. Go through the container numbers several times and make sure every container number is there and that there are no duplicates. Sometimes the software saves a weighing twice. Only select one of those. Once the worklist is ready to be converted into a sample table, export it to the current Expedition's folder. This file will be imported in the CHNS software as the sample table.

General Safety

The user should be familiar with the hazards related to the use of this system before beginning work (see Health, Safety & Environment at the end of this manual). High-pressure gases, high temperatures, and toxic chemicals are all present in CHNS work.

Apparatus, Reagents, & Materials

Hardware

Carbon, hydrogen, nitrogen, and sulfur are analyzed on a Thermo Electron Corporation FlashEA 1112 CHNS elemental analyzer (Figure 1) with autosampler (Figure 2).

Figure 1. Elemental Analyzer: (1) Furnace Access Door, (2) Synoptic Panel, and (3) Thermostatic Chamber Access. Dry Sample Autosampler is located on top of furnace.

Figure 2. Dry Sample Autosampler (red box in Figure 1): (1) Drum, (2) Gas Connection Fitting, (3) Gas Tube, and (4) Reactor Fitting

Figure 4. Furnace Compartment Access with Protection Plate
WARNING! Do not open the furnace compartment during operation

Figure 5. Interior Furnace Compartment

WARNING: Do not touch either furnace when the furnace temperature is >40°C (To check temperature, select View > View Elemental Analyzer Status)

Figure 6. Detector Access: Protection Plate, GC Column (inside), Adsorption Filter
WARNING: The GC column may only be serviced by the shipboard technicians

Laboratory Apparatus

• Agate mortar and pestle: well washed and dried
• Chamber for freeze drier: well washed and dried
• Dessicator and silica gel: use activated and well-dried silica gel
• Weighing paper
• Mill 
• Kimwipes
• Sample holder: stainless steel with 50 numbered holes
• Spatula
• Spatula (general laboratory spoon): stainless steel, well washed and dried
• Spring tweezers (2)
• Tin containers (set of 100): Thermo Electron PN 240 064 00
• Tin discs (30 mm) (set of 100): Thermo Electron PN 252 080 15, optional

Chemicals and Reagents

Be sure to read the Health, Safety, and Environment section before using any of the chemicals and reagents in this method.

Gases

• Helium (carrier gas): chromatography grade
• Oxygen (sample oxidation gas): 99.995% minimum purity

Reagents

Note that many of these materials are hazardous and before any work is done with them, the user must be familiar with the appropriate Material Safety Data Sheets (MSDS).

Other Consumables and Tools

• Pre-packed reactor: Thermo Electron PN 468 020 15; also CE Elantech 061110
• Cleaning devices: Thermo Electron PN 205 006 25 and 276 060 10
• HPAR reactor extractor
• Crucible extractor

Liquid Sample Consumables

An expedition-specific science strategy or sample materials may require additional apparatus to handle liquid sample analysis.

Automatic sampling system with injection assembly
Water container and vials for solvent
Syringe (0.5 µL): PN 36504045
Syringe (10 µL): PN 36500525
Syringe (250 µL): PN 013680 (36504042)

Instrument Description

C, H, N, and S are analyzed on a Thermo Electron Corporation FlashEA 1112 CHNS elemental analyzer (Figure 1, below) with the following specifications:
–Supplier: Thermo Electron Corporation
–Model: FlashEA 1112
–Detector: Thermal conductivity detector (TCD)
–Instrument Control: Eager 300 software for MS Windows
–Power Supply: 230 V AC; 60 Hz (US); 140 VA
–Dimensions: 500 mm H × 590 mm W × 558 mm D
–Weight: 65 kg
–Measurement Range: 100 ppm to 100% for C, N, H, and S
–Nominal Measurement Time: CNS: 8 min, CHNS: 10 min
–Sample Weight: 0.01–100 mg according to nature of the sample
–Temperature range:15°–35°C Maximum rel. humidity:30%–85%
The basic CHNS instrument configuration contains the following components.

CHNS Components

1. Autosampler (highlighted in red in Figure 2 and shown in detail in Figure 3)
2. Gas tubing for helium and oxygen
3. Synoptic panel
4. Furnace (furnace cover plate shown in Figure 4; opened plate in Figure 5)
5. Reactor
6. Oven
7. Water adsorption column (shown in Figure 6)
7. Gas chromatographic column (also in Figure 6)
8. TCD detector

Instrument Operation

Run the program Eager Xperience. Select Analyzer #1.

Instrument Parameters

Helium pressure: 260 kPa

Left furnace: 950°C

TCD on: ~1400 µV

Oxygen pressure: 300 kPa

Oven: 60°C

Combustion Column (a.k.a. reactor tube)

• A combustion column will last approximately 100–120 samples. The life of a combustion column can be extended by using a quartz insert. 
• To condition a new column, run a standard 2 times as an Unk (unknown). Put a scoop of standard in a tin cup without weighing it. Wrap the sample as normal. Enter mass 1. Verify that you see a peak for nitrogen and carbon if using Buffalo River standard. Below is a sample chromatogram from a Buffalo River check standard run. With conditioning we are only verifying that we get a "normal" looking chromatogram with peaks. The height of the peaks is unimportant at this point. 

Typical Buffalo River check standard chromatogram 

Sulfur and Hydrogen

• If analyzing for sulfur, add vanadium pentoxide to the sample cups.
• If analyzing for hydrogen, remove the magnesium perchlorate trap. Run time will be around 1200 seconds.

Calibration

The instrument is calibrated at the beginning of each sequence. The calibration factors will first need to be reset:
Recalculation > Reset Calibration Factors
Immediately after the standards have been run, according to the sample table, check the calibration:
View > View Calibration Curve (select the element of interest)
If the calibration is not acceptable, stop the sequencing, redo the standards, and start the sequence again, so no samples will have to be re-weighed.
Calibration is verified during the sequence by running the standard as an unknown. 

Running Samples

1. Upload the LIMS sample table (Figure 2) to the instrument:

Edit > Sample Table
Edit Sample > Import sample table from LIMS (select the file exported from Worklist Generator)

The sample/sequence table should look similar to the one above.

• Column A: Act signifies which is the current sample
• Sample name:
  • BYPASS
  • BLANK
  • TEXT ID
• Filename: A unique name. Worklist Generator creates the names for the samples
• Type:
  • Bypass (empty slot in autosampler)
  • Blank (empty tin capsule)
  • Std (calibration standard)
  • Unk (sample or standard)
• Standard name: only the calibration standards will have this field filled in.
• Weight: Values from Worklist Generator are automatically filled in for standards and samples.

2. With the zero slot in the drop position, load the autosampler tray with the standards and samples; leave empty slots for BYPASSes. Make sure that the lid is on the tray. Advance the zero slot to slot 1.

3. Run samples:

a. Click the green icon.

b. Monitor acquisition status at View > View Sample Being Acquired. Keep an eye on the autosampler and add samples as necessary. A good time window to add samples is after the peaks have come out in a chromatogram and before the end of the run. Remember to put the lid back on after adding samples. Any samples analyzed while the lid is not on will have to be reweighed and rerun. 

Sample Preparation

Samples are freeze-dried, crushed, and homogenized using a mortar and pestle or an electric mill and weighed into a tin sample cup (crucible). If sulfur is being analyzed, vanadium pentoxide is also added, acting as a catalyst. The crucibles are then closed (referred to as "wrapping" the sample) for instrumental analysis.

The following amounts are currently used:

• Standards: 3, 5, 10, 15, 20, 40 and 60 mg
• Unknown samples: 12–15 mg
• Vanadium pentoxide (if used): ½ small spatula for blanks, standards, and unknowns

Drying and Homogenizing the Sample

1. For faster free-drying, samples can be taken out of sample tubes and broken into pieces.
2. Freeze-dry samples for at least 12 hrs until samples are completely dry (may require additional freeze-drying time, up to 3 hrs). The sample is dry when there is no more condensate in the cold part of the tube. Also when a sample bag is felt immediately after releasing the vacuum, if the sample still feels cold, there is residual moisture in it. Freeze-dried samples should not feel cold coming out of the freeze-dryer. Note: do not overload the freeze-dryer; it will not dry properly.
3. Wipe an agate mortar and pestle with ethanol and allow to dry completely before grinding each sample. Be sure the mortar and pestle are completely dry; ethanol residue can cause false C and H results.
4. Grind and homogenize sediment using a cleaned and dry agate mortar and pestle.
5. Fill a sample bottle with powdered homogenized sediment.

Sample Volume

Because the balance system is of unknown lower precision aboard ship than in a shore-based laboratory, we recommend 6–9 calibration points to obtain a high CHNS measurement precision. The usual quantities of sample materials and standards used are as follows:
–Vanadium pentoxide: ½ of small spatula for blank, standard, and unknown samples
–Standard (sulfanilamide):

• 3.0 mg × 2 to 3 replicates
• 5.0 mg × 2 to 3 replicates
• 7.0 mg × 2 to 3 replicates
• Note: Sulfanilamide is not necessarily the right standard for a given set of samples: try to bracket your unknown samples with the standards for each element of interest.

–Standard sediment or sulfanilamide (for QA/QC evaluation; see Quality Assurance/Quality Control): 11 mg, minimum 10 pieces may be required for one sequence of the measurement.
–Unknown samples: The amount used depends on the nature of the sample material. If material is unusual, it may be necessary to weigh out several different quantities of sample to correctly analyze the material. Typical masses of some materials are:

• Hemipelagic sediments: 11–12 mg
• Pelagic sediments (low productivity): 11–15 mg
• Upwelling area (high productivity area): 10–12 mg

Clean Preparation Equipment

Wipe spatula, spring tweezers, balance, and other stainless equipment with ethanol between each sample. Be sure these are completely dry before using to avoid contaminating samples.

Weighing and Wrapping Samples

1. Double-click the Cahn Balance icon.
2. Log into the system by entering LIMS user name and password.
3. Enter the Text ID and the Container number of the sample or standard.
4. Enter 100, 200 or 300 as the Measurement Count depending on sea state.
5. Place an empty crucible (tin container) on the REFERENCE balance pan (right pan).
6. Place a new crucible into the small hole of the metal plate.
7. Flare the upper half of the tin cup and place a crucible on the UNKNOWN balance pan (left pan).
8. Tare the balance using the software. (Do not press the Tare button on the Cahn balance.)
9. Click Start to start weighing.
10. Once the mass volume is acceptable, click Get Mass.
11. Remove the crucible from the UNKNOWN balance pan, place the crucible on the metal plate, and place the appropriate amount of sample material (see Sample Volume) into the crucible.

NOTE: DO NOT use the holes on the metal plate if any standard material is spilled in or near it because even a small amount of standard may contaminate the measurement.

1. Place crucible with sample material back on the UNKNOWN balance pan and close door.
2. Click Weigh and Start.
3. Click Get Mass if the mass value is acceptable.
4. Enter any part of a sample ID or Label ID and click Search.
5. Select the sample that was just weighed from the list and click Assign.
6. Enter a container number (sample holder number, not an autosampler number) in the Container# field.
7. Click Save.

Sample Analysis

Data flow for CHNS sample analysis includes the following:

• Prepare the instrument for running samples (see Preparing the Instrument).
• Confirm instrument calibration (see Verifying Instrument Calibration).
• Export LIMS file from LabWare for CHNS (see Creating the Sample Table).
• Import LIMS sample table and edit (see Uploading the Sample Table to Eager 300 Software).
• Start sequence (see Running Samples).
• Summarize, edit, and analyze results (see Analyzing Data).
• Export sample data as CSV file and upload to LIMS (see LIMS Integration).

Preparing the Instrument

The shipboard technician will set up and maintain the reactor and gas chromatographic column. The technician will also instruct the scientist on the operation of the instrument.
Instrument startup and conditioning are conducted by the shipboard technician, who also loads the analytical configuration (method). If a specific analytical configuration is required because of the nature of the samples, scientists should collaborate with the technician to develop the analytical method and run parameters. When the instrument is ready, the Eager 300 CHNS screen displays. To confirm the status of the CHNS analyzer instrument, select View > View Elemental Analyzer Status (see Figure 4, below).(Figure 3). Analytical determination takes approximately 40, 100, 150, and 640 seconds for nitrogen, carbon, hydrogen and sulfur, respectively, for a 2 m long separation column. The integration time should be set to approximately 15 min (900 sec) for runs in which sulfur is measured due to the breadth of the signal peak. Either purchase pre-filled reactor columns or prepare them according to the manufacturer's instructions. The adsorption filter should be filled with fresh magnesium persulfate regularly. The JRSO uses pre-packed reactor columns from CE Elantech and Costech; these have always proved to be of high quality, without gaps or faults in the reagents that could lead to a poorly-reacted gas stream.

If pre-filled reactor columns are not available, follow the instructions in the Flash EA 1112 vendor manual to prepare them. Packing columns is in Chapter 5 of the vendor manual; installing reactor and adsorption columns is discussed in Chapter 6. Note that the JRSO uses CE Elantech 061110 columns for sulfur, loaded with copper and tungsten oxide, but many other options are possible.

A general schematic is shown below in Figure 3. Prepare the EA reactor, adsorption filter, and chromatographic column for the desired analytical elements according to the following schematic:

Figure 3: Analytical equipment setup based on desired elements.
Properties of reactor materials and adsorption filter: Copper oxide/chromium oxide: Creates an oxidizing environment during combustion of the sample. Vanadium pentoxide: Catalyzes the combustion of S (as sediment ion sulfate/sulfides) to sulfur dioxide. Tungsten oxide (WO₃): Helps complete the oxidation of combustion products to final products.

Electrolytic copper: Reduces potentially formed nitrogen oxides and sulfur trioxide combustion products to elemental nitrogen and sulfur dioxide. Silvered cobaltous/cobaltic oxide: Catalyst used to remove sulfur dioxide and halogens. Magnesium perchlorate (anhydrone): Desiccant which removes water (i.e., combusted H) in the adsorption filter.

Figure 4. Eager 3000 CHNS Screen.  

Checking for Leaks

1. Select Edit > Edit Elemental Analyzer parameter.
2. Select the Flow / Timing tab (Figure 8).
3. Select (check) the Carrier, Oxygen, and Reference parameters.
4. Click Send to transfer the parameters.
5. Click OK to close window.
6. Click NO to exit without saving the method.
7. Select View > View Elemental Analyzer Status.
8. Select the Special Functions tab (Figure 9).
9. Click Leak Test to open the Leak Check screen.
10. Click Start to begin the operation.
11. Click Yes for the Eager 300 to automatically test for leaks.
12. After a few seconds, the reference gas flow must be 0.
Note: After ~560 sec, carrier flow will decrease. Carrier flow must be between 0 and 3 mL/min. Higher values indicate the system is not leak free. Leaks in the system are generally due to incorrect closure of the reactor and filter locking nut. Rarely, leaks may be due to the autosampler.

Flow/Timing Tab

Special Functions Tab and Leak Test Screen

Copying and Loading Method

1. To copy and load a previous method, select File > Copy method from... (Figure 10).
2. Uncheck the Sample table check box.
3. Click the button to the right of Method File… to select the method.
4. Select the method file IODP_NCHSsystem from the folder that has the previous expedition number and click Open.
5. Select Edit > Edit Elemental Analyzer parameters.
6. Click File and select the folder that has last expedition number.
7. Open file IODP_NCHS.eam.
8. Click File > Save as to save instrument settings into the created folder. Note: Your created folder now contains three files with extensions MTH, EAM, and CC.
9. Select File > Save method.
10. Use same method file that you copied in an earlier step and select the folder that you created.
11. Click Save to save the copied method in the new folder.
12. Select File > Load method > Load New Method.
13. Select the folder that contains the copied method and click Open to load method.
14. Click Send Parameters to Analyzer to send the method to the instrument.
    Warning: When the furnaces begin to heat, helium flows in the circuit and the Furnace, Oven, and TCD lights illuminate on the synoptic panel.
15. Select View > View Elemental Analyzer Status to confirm status of instrument.

If the analytical configuration changes from CHNS to CNS, select File > Instrument Configuration on the main screen before editing the method (see instructions in the FlashEA Operating Manual, p. 217–221).

Copy Method from Screen

Editing the Method

Select Edit > Edit Element Analyzer parameters. The following parameters will display:
–Temperature tab:

• Left Furnace: generally not checked
• Right Furnace: checked, 900°C default (keep value)
• Oven: checked, 65°C default (keep value)

–Flow / Timing tab:

• Carrier: checked, 140 mL/min (This can be changed to achieve peak separation).
• Oxygen: checked, 250 mL/min (default)
• Reference: checked, 100 mL/min (default)
• Cycle (Run Time): 600 sec (default)
• Sampling Delay: 12 sec (default)
• Oxygen Injection End: 5 sec (default)

–Detector tab:

• Filament On: checked
• Time Event: not checked

Note: Peak retention times are confirmed based on the chromatogram of the Bypass sample obtained using standard materials, which is then used to validate the calibration curve.

Checking Maintenance Status

If a reactor is changed, the maintenance program must be reset. The maintenance program shown in Figure 11 gives an indication of reactor life. Reactor deterioration can also be detected on chromatograms.

Maintenance Program Screen

Reactor life is also influenced by the nature of samples, especially water content. So you may have to check for anomalies on the chromatogram on a regular basis, as follows:

1. Select View > View Maintenance. The Maintenance Program screen shows the reactor status (Figure 11). To reset the maintenance program, select Edit > Reset Maintenance Program.
2. Select View > Maintenance Status to see the current settings. The program can be changed in two ways.
3. Click Edit > Default. Original settings for Left 1 and Left 2 were

• • Lifetime: 200
  • Number of runs to warning message: 10

4. Click Edit > Manual. Based on onshore tests, change the settings to

• Lifetime: 170
• Number of runs to warning message: 10

5. Click OK to save changes.

Verifying Instrument Calibration

The CHNS instrument is calibrated at the beginning of each expedition (see Quality Assurance/Quality Control). Calibration is verified before running each sample sequence by running a blank and a calibration verification standard against the current calibration curve.

Reset the Calibration Factors

1. On the CHNS screen, select Recalculation > Reset Calibration Factors and then click OK.
2. Double-click on CHNS.exe and enter LIMS user name and password to activate CHNS Loader.
3. Select the Output Sample from LIMS tab.
4. Select calibration standards, which have analysis codes CHNS QAQC and verification code Standard, with one blank to be run in the next batch or sequence.
5. Row number (located at the right bottom of the window) must be 1.
6. Click Export to create the LIMS file.
7. Save LIMS file into the folder where you saved the method.

Upload LIMS file to Eager 300 software

1. On the CHNS screen, select Edit > Sample table.
2. From the menu at the top of the sample table, select Edit sample > Import sample table from LIMS.
3. Select an appropriate file and click OK to upload file.
4. Click Cancel to escape the window.

Edit the calibration curve sample table (Figure 4)

1. Select an appropriate standard name (e.g., Sulfanilamide).
2. Ensure the order of the container number (see the end of Filename) is correct.
3. Click OK to close window.
4. Select File > Save Method on the CHNS screen to save changes. (Calibration data will be saved into LIMS with the first batch of unknown sample measurements.)
5. On the CHNS screen, click the green arrow toolbar icon to analyze the blank and standards.
6. Confirm blank: during the blank run, select View > View sample being acquired from the CHNS screen. If the chromatogram has unexpected peaks or a disturbed baseline, the cause of this problem must be determined before unknown samples can be run.

Confirm the Calibration Curve (Figure 5)

1. On the CHNS screen select View > View Calibration curve.
2. Click Component to change curve components (color of selected component will change to blue).
3. Check calibration factor.

Calibration method can be changed on this screen. For more information see the FlashEA 1112 Operating Manual (p. 232).
If the calibration factor is acceptable (see Quality Assurance/Quality Control), unknown samples can be run. If the calibration factor is outside of control limits, the laboratory technician will edit the component table and integration parameters and recalculate the calibration factor.

Figure 5. Sample Table.

Calibration Curve

Creating the Sample Table

1. Double-click on CHNS.exe.
2. Enter the LIMS user name and password to activate CHNS Loader.
3. Open the Output Sample from LIMS tab.
4. Click column header Container (samples are sorted by container number).
5. Select samples to be run in the next batch or sequence.
6. Adjust row index. Row index number must be the same as the row number that is two rows below the last sample in the current sequence table of the Eager 300 software.
7. Click Export and save file to the folder where you saved the method.
8. Exit the CHNS Loader.

Uploading the Sample Table to Eager 300 Software

1. On the CHNS screen, select Edit > Sample table.
2. From the menu at the top of the sample table, select Edit sample > Import sample table from LIMS.
3. Select appropriate LIMS file, and click OK to upload file.
4. Click Cancel to escape the window.
5. Make sure sample holder number is correct.

Edit Sample Menu.

Running Samples

1. To start running samples, click the green arrow toolbar icon on the CHNS screen.
2. To monitor the acquisition status, select View > View sample being acquired (Figure 7Figure 8).
3. Once samples are run, View Chromatograms shows a single selected chromatogram; Overlay Chromatograms is better suited for comparison of chromatograms (maximum of five).

Figure 8. View Menu.

Analyzing Data

QA/QC data is captured by LIMS, but the technician should monitor QC values from the calibration verification (CV) standards and determine if corrective action should be taken.
After analyzing the standard and checking the instrument precision, complete the following steps.

The current (X395C) data processing procedure:

1. Go to Recalculation > Summarize results. Select weight percent results. 
2. Go to File > Export to Excel. Save as "site-date-filename-wtpct". 
3. Make a working copy of the wtpct file. Look for any negative nitrogen values and make them BDL (below detection limit). Also, if you have sulfur values show up when you didn't analyze for sulfur, make those 0. Go through all the data very carefully and tidy it up before uploading. Editing afterward will be very difficult. 
4. Copy the file created in Step 3 to the MUT upload directory ("Data in" folder on desktop). Save the raw data file - all files will go on Data1.

5. In MUT, select Upload to open a window as shown above in Figure 4. Uncheck all files that you are not uploading. Do not leave any bypasses or blanks checked. Check standards do get uploaded. 

Click on :

a. Select Method: Choose your EA method file.

b. Select Summary: Choose the summary file from the sequence just run.

c. Select Configuration: Choose your method configuration file

d. The OK button will then become active. Click on it. The rows will turn green as they upload. 

Older version:

1. On the CHNS screen, select Recalculation > Summarize results (Figure 8Figure 9).
2. Select a group of samples to calculate the standard deviation for by indicating a group number (1) in the Group column of the Summarize results table. For example, in Figure 8 Figure 9 the 6 sulfanilamide standards are grouped (1) for standard deviation analysis.
3. With the mouse, select the first row of a group (Row 2 in Figure 8Figure 9) and select View > Statistical Calculation to see statistical data calculated for that group.

Figure 9. Summarize Results Screen.

Quality Assurance/Quality Control

A program of quality assurance/quality control (QA/QC) ensures that a measurement system is performing within control limits and therefore provides high-quality data. The QA/QC program for this system includes instrument calibration and calibration verification, blank verification, and accuracy and precision monitoring.

Instrument Calibration

The CHNS instrument is calibrated by the chemistry technician at the beginning of the expedition. Calibration is verified routinely during operation by running calibration verification standards (see Calibration Verification).

Sequence

An analytical sequence is a group of sample runs sharing a calibration curve, blanks, reference materials, and verification samples. One sequence (table) allows a maximum of 200 samples.

Analytical Batch

An analytical batch is a group of samples run together. Each CHNS batch of unknown samples contains a calibration verification sample, calibration blank, and known sample.

Calibration Blank

A calibration blank run each sequence consists of a tin cup containing only reagent V₂O₅ catalyst to assess the effect that the tin cup and catalyst have on the analysis results. If the blank chromatogram has unexpected peaks or a disturbed baseline, the cause of this problem must be determined before unknown samples can be run. Notify the chemistry technician.

Calibration Verification

The calibration verification standard, also called the QC check standard, is run with each analytical batch and contains _{0.6–0.7 g of BBOT in a tin cup with V}2_O5~ catalyst. If the calibration factor is within control limits, unknown samples can be run. If the calibration factor is outside of control limits, edit the component table and integration parameters and recalculate the calibration factor.
Poor calibration verification results can also indicate degradation of the reactor. If calibration cannot be verified, notify the onboard laboratory specialist.

Precision

Precision is the degree to which further measurements will show the same or similar results. To analyze for precision on this system, a standard (sulfanilamide, BBOT, or aspartic acid) is run in duplicate or triplicate and the standard deviation of the results calculated for each element:

where   = average of results,  and N = number of data points.

Accuracy

Accuracy is the degree of closeness of a measured value to the actual (true) value. A standard of sulfanilamide in a tin cup with V₂O₅ catalyst is run with each sequence to verify accuracy. Results of the standard must be within ±10% of true values for the system to be considered in control. Sulfanilamide true values and control limits:

• C = 41.848% (37.663%–46.033%)
• H = 4.685% (4.217%–5.154%)
• N = 16.267% (14.640%–17.894%)
• S = 18.620% (16.758%–20.482%)
• O = 18.582% (16.724%–20.440%)
• Other materials (e.g., USGS reference sediments) can be used to measure accuracy, so long as their values are known.

LIMS Integration

Sample/Analysis Components

When uploading data enter the term "Rejected" in place of the value for an elemental concentration for a sample or series of samples that followed a running standard in which the analytical error exceeded the QA/QC limits (10% for each element). This displays "Rejected" in LIMS/LORE for only that specific sample element and still keeps intact the excel file containing the raw data which is uploaded to the database.

Health, Safety, & Environment

Safety

General

• Before using the gases, chemicals, and filling materials required for this procedure, carefully read the MSDS for that material.
• Proper personal protective equipment must be used for handling all apparatus and materials in this procedure.
• The instrument has a safety cutoff feature that cuts power to the furnace heating elements if the instrument malfunctions due to a component failure or abnormal operating conditions. If the red safety LED indicator on the synoptic panel is illuminated, contact laboratory staff immediately.

Warnings

• WARNING! Do not open the furnace compartment during operation.
• WARNING: Do not touch either furnace when the furnace temperature is higher than 40°C. Furnace temperature is shown in the EA 1112 Status screen (Select View > View Elemental Analyzer Status).
• WARNING: Do not open the protection panel. The gas chromatographic column may only be serviced by the shipboard technicians.

Compressed Gases

• Gas cylinders are pressure hazards and should be changed only by shipboard staff. High-pressure gas lines can be hazardous if there are leaks, particularly the oxygen line.
• United States standards for inert gas and oxidation regulators exist to physically prevent the user from hooking an oxidizing gas (e.g., O₂) to an inert gas line and vice versa. Always use the appropriate CGA fitting for each gas! The JRSO uses the following fitting types for the gases used in this method:
• Inert Gas (Helium): CGA 580 (male, right-hand threading)
• Oxidizing Gas (Oxygen): CGA 540 (female, right-hand threading)
• Adapters do exist to convert one gas fitting to another: do not use them! The gender and threading direction of the standard fittings are designed to protect the user.
• Gas cylinders should always be restrained at two points by a strap or chain. In the case of single cylinders at use in the laboratory, do not share a strap or chain between two cylinders: each cylinder should have its own restraining gear. In the case of the gas racks in the hold, consult with the Laboratory Officer before attempting to separate a gas cylinder from the rack.
• Specific Gas Descriptions
• Oxygen is an odorless colorless gas that is a strong oxidizer. An oxygen leak could cause spontaneous combustion if an organic source is at hand. Always check the O₂ lines for leaks. Appropriate precautions should be taken.
• Helium is an odorless colorless inert gas. Rapid release of He from a cylinder could potentially asphyxiate the user, so appropriate precautions should be taken.

Chemical Safety

Many of the chemicals used in the CHNS procedure, including the standards, present potential chemical hazards. Always read the material safety data sheet (MSDS) of each and every chemical before working with them. Some of the highest-hazard chemicals are summarized below:

Magnesium Perchlorate

Extremely Strong Oxidizer! Keep away from organic materials and mineral acids.
Air and Water Reactive!

• Highly exothermic upon addition of water
• Absorbs water from air
• May explode under prolonged exposure to heat
• Will increase intensity of a fire

Health hazard:

• Inhalation: irritant
• Contact: irritant
• Ingestion: abdominal pain, vomiting, diarrhea, may be fatal

Vanadium Pentoxide

Extremely toxic! Always use the appropriate personal protective equipment (PPE) and environmental controls when using this chemical.

• Harmful if swallowed or inhaled

• Causes serious eye damage

• May cause respiratory irritation

• Suspected of causing genetic defects, damaging fertility, and/or harm of the unborn child

• Causes damage to internal organs through prolonged or repeated exposure

• Toxic to aquatic life with long-lasting effects

General

• Before using the gases, chemicals, and filling materials required for this procedure, carefully read the MSDS for that material.
• Proper personal protective equipment must be used for handling all apparatus and materials in this procedure.
• Gas cylinders are pressure hazards and should be changed only by shipboard staff. High-pressure gas lines can be hazardous if there are leaks, particularly the oxygen line.
• The instrument has a safety cutoff feature that cuts power to the furnace heating elements if the instrument malfunctions due to a component failure or abnormal operating conditions. If the red safety LED indicator on the synoptic panel is illuminated, contact laboratory staff immediately.

Warnings

• WARNING! Do not open the furnace compartment during operation.
• WARNING! Do not touch either furnace when the furnace temperature is higher than 40°C. Furnace temperature is shown in the EA 1112 Status screen (Select View > View Elemental Analyzer Status).
• WARNING! Do not open the protection panel. The gas chromatographic column may only be serviced by the shipboard technicians.

Pollution Prevention

Degree of pollution according to IEC 664 = 2

Waste Management

This procedure generates no waste for disposal beyond the standard chemistry laboratory protocols.

Archive Versions

LMUG-CHNSUserGuide-230220-1858-136.pdf