NGA User Guide
- Chieh Peng (Unlicensed)
- jr_marone
- jr_suhonen
Introduction
Natural gas analysis for hydrocarbons and hydrogen sulfide (H2S) is required to avoid natural gas and oil escaping from the hole and is part of the ship's standard drilling safety plan.
The absolute quantity of hydrocarbons is the primary safety risk during shipboard operations. Gas monitoring via gas chromatography is a means of quantifying the hydrocarbon risk. H2S is another significant risk factor for individuals working in the area. Emergency monitors on the drill floor provide early detection of H2S, while later quantification is performed on the natural gas analyzer (NGA). A primary method of monitoring safety conditions is the concentration ratio of methane to ethane versus temperature (Figure 1).
Figure 1. Risk Assessment for Drilling Safety (IODP).
Hydrocarbon Generation
Hydrocarbon generation in sediments is a result of thermal decomposition (maturation) of biogenic organic matter. C1–C4 hydrocarbons may be generated in significant quantities in sediment via two processes:
- Biogenic: biogenic hydrocarbons, typically characterized by methane, are produced in a sulfate-free environment via the reduction of dissolved bicarbonate.
- Thermogenic: thermogenic hydrocarbons are produced in sediments in direct proportion to temperature. C5 and other heavier hydrocarbons are almost always the result of thermal generation of hydrogen-rich organic matter at temperatures typically ~100°C or greater.
The evolution of sedimentary biogenic organic matter under increasing burial depth and consequent temperature rise is divided into three stages:
- Diagenesis
- biological, physical, and chemical alteration of sedimentary organic matter that occurs at low temperature (<50°C) in relatively recently deposited sediments (Peters et al., 2005).
- Catagenesis
- principal zone of oil formation, refers to a temperature range of 50°C~150°C. Liquid and gaseous hydrocarbons together with organic compounds with heteroatoms (oxygen, sulfur, and nitrogen) are released from the kerogen (Figure 2), so the catagenesis stage is called the "oil window."
- Metagenesis
- Dry gases (mainly methane) are derived from liquid hydrocarbon accumulation in the crust (Figure 3). C1–C4 hydrocarbons may be generated in significant quantities in sediment via biogenic and thermogenic processes.
Figure 2. Hydrocarbon Formation Pathways in Geological Situations (Rullkotter, 1993). 
Figure 3. Hydrocarbon Generation Resulting from Burial of Organic Matter during Geologic Time.
Hydrogen Sulfide
Sulfate-reducing bacteria produce hydrogen sulfide in euxinic sediments. This may occur in a relatively shallow part of the sediment. Thermochemical sulfate reduction of sulfate by hydrocarbons in reservoirs occurs under high temperature (>127°C ~ 140°C).
Instruments
The NGA systems are both based on an Agilent 7890 GCs. These systems were further customized with specialized gas injection inlets and various column, detector, and valving systems for gas monitoring
Gases
The GC requires that hydrogen and air are connected to the marked fittings on the back of the instrument. The type of makeup gas must be identified in the method file.
- Air, compressed (Zero-Air +): >50 psi
- Helium, compressed (99.9995% +): >50 psi
- Hydrogen, compressed (99.9995% +): >50 psi
Method
Theory of method
The NGA gas chromatograph is equipped with 2 detectors:
- Flame ionization detector (FID)
- Thermal conductivity detector (TCD)
The TCD flow path travels through a 6 ft x 2.0 mm ID stainless steel (SS) column packed with Poropak T (50/80 mesh), a 3 ft x 2.0 mm ID SS column packed with molecular sieve 13x (60/80 mesh), and 6 ft x 2.0 mm ID SS column packed with 80/100 mesh HayeSep R (acid washed).
The FID flow path traverses a 60 m x 0.25 mm ID capillary column with 0.25 µm DB-1 film.
This instrument measures C1–C7 hydrocarbons as well as some additional compounds:
- Methane (CH4)
- Ethene (C2H4)
- Ethane (C2H6)
- Propene (C3H6)
- Popane (C3H8)
- n-Butane (C4H10)
- iso-Butane (CH3-C3H7)
- n-Pentane (C5H12)
- iso-Pentane (CH3-C4H9)
- n-Hexane (C6H14)
- iso-Hexane (CH3-C5H11)
- n-Heptane (C7H16)
- iso-Heptane (CH3-C6H13)
- Nitrogen (N2)
- Oxygen (O2)
- Carbon dioxide (CO2)
NGA Sample Flow Schematics
Standby Mode
He gas flow for standby mode (green lines).
- Line 1: Aux-3—V1-4—V2-5—V2-3—capillary column—V2-4—V2-1—FID
- Line 2: Aux-4—sample inlet—V1-2—V1-3—V1-6—V1-1—V3-3—V3-4—V3-1—V4-3—V4-2—V4-5—V4-4—Vent
- Line 3: Front inlet—V3-5—V3-6—HaySep R column—V3-8—V3-7—V4-9—V4-8—TCD
- Line 4: Back inlet—V4-6—V4-7—MolSieve column—V4-1—V4-10—Vent
Figure 9. NGA in Standby Mode.
Injection mode
He carrier gas (green line) and sample gas (red line) flows in the NGA in injection mode. Sample gas fills the sample loops connected to V1 (25 µL), V3 (1 cm3), and V4 (0.5 cm3). He flushes the separation columns.
He gas flow (green):
- Line 1: Aux-3—V1-4—V1-5—V2-3—V2-2—capillary column—V2-4—V2-1—FID
- Line 3: Front inlet—V3-5—V3-6—HaySep R column—V3-8—V3-7—V4-9—V4-8—TCD
- Line 4: Back inlet—V4-6—V4-7—MolSieve column—V4-1—V4-10—Vent
Sample gas flow (purge; red):
- Sample inlet—V1-2—V1-3—V1-6—V1-1—V3-3—V3-4—V3-1—V3-2—V4-3—V4-2—V4-5—V4-4—Vent
Figure 10. NGA in Injection Mode.
Run Mode at 0.01 min (open Valve V4)
He (green) and sample gas (red) flows in the NGA 0.01 min after start of run. Sample gas remains in the sample loop connected to V1 (25 µL) and V3 (1 cm3). After V4 opens, He returning from the back inlet pushes the sample gas out of the sample loop and into the molecular sieve column. Separated elements are detected by TCD.
He gas flow:
- Line 1: Aux-3—V1-4—V1-5—V2-3—V2-2—capillary column—V2-4—V2-1—FID
- Line 2: Aux-4—V1-2
- Line 3: Front inlet—V3-5—V3-6—HayeSep R column—V3-8—V3-7—V4-9—V4-10—Vent
- Line 4: Back inlet—V4-6—V4-5
Sample gas flow (purge):
- V1-2—V1-3—V1-6—V1-1—V3-3—V3-4—V3-1—V3-2—V4-3—V4-4—out
Sample gas flow with He:
- V4-5—V4-2—V4-1—MolSieve column—V4-7—V4-8—TCD
Figure 11. NGA in Run Mode: 0.01 min after starting run.
Run Mode at 0.07 min (open Valves V1 and V2)
He (green) and sample gas (red) flows in the NGA 0.07–1.79 min after start of run. Sample gas remains in the sample loop connected to V3 (1 cm3). After V1 and V2 open, He from Aux-3 pushes the sample gas out of the sample loop connected to V1 (25 µL) and into the capillary column (60 m) through V2, where it passes into the FID.
He gas flow:
- Line 1: Aux-3—V1-4
- Line 2: Aux-4—V1-2
- Line 3: Front inlet—V3-5—V3-6—HaySep R column—V3-8—V3-7—V4-9—V4-10—vent
- Line 4: Back inlet—V4-6—V4-5—V4-2—V4-1—MolSieve column—V4-7—V4-8
Sample gas flow (purge):
- V3-4—V3-1—V3-2—V4-3—V4-4—out
Sample gas flow with He:
- V4-8—TCD
- V1-3—V1-6—V1-5—V2-3—V2-4—capillary column—V2-2—V2-1—FID
- V1-1—V3-3
Figure 12. NGA in Run Mode: 0.07–1.79 min after starting run.
Run Mode at 1.80 min (open Valve V3)
He (green) and sample gas (red) flows in the NGA 1.80–1.82 min after start of run. After V3 opens, He from the front inlet pushes the sample gas out of the 1 cm3 sample loop into the HaySep column.
He gas flow:
- Line 1: Aux-3—V1-4—V1-3—V1-6—V1-5—V2-3—V2-4
- Line 2: Aux-4—V1-2—V1-1—V3-3—V3-2—V4-3—V4-4—out
- Line 3: Front inlet—V3-5—V3-4
- Line 4: Back inlet—V4-6—V4-5—V4-2—V4-1—MolSieve column—V4-7—V4-8—TCD
Sample gas flow with He:
- Capillary column—V2-2—V2-1—FID
- B3-4—V3-1—V3-8—HaySep R column—V3-6—V3-7
Figure 13. NGA in Run Mode: 1.80–1.82 min after starting run.
Run Mode at 1.83 min (close Valve V4)
He (green) and sample gas (red) flows in the NGA 1.83–8.49 min after start of run. After V4 closes, He from the back inlet flushes the molecular sieve column (backflush). Gas samples separated by the HaySep column enter the TCD through V4.
Helium gas flow:
- Line 1: Aux-3—V1-4—V1-3—V1-6—V1-5—V2-3—V2-4—capillary column—V2-2—V2-1—FID
- Line 2: Aux-4—V1-2—V1-1—V3-3—V3-2—V4-3—V4-2—V4-5—V4-4—out
- Line 3: Front inlet—V3-5—V3-4—V3-1—V3-8
Sample gas flow with He:
- HaySep R column—V3-6—V3-7—V4-9—V4-8—TCD
Backflush:
- Line 4: Back inlet—V4-6—V4-7—MolSieve column—V4-1—V4-10—vent
Figure 14. NGA in Run Mode: 1.83–8.49 min after starting run.
Run Mode at 8.50 min (close Valve V3)
He gas (green) and sample gas (red) flows in the NGA 8.50–9.09 min after start of run. After V3 closes, He from the front inlet flushes the HaySep column and the line leading to the TCD (backflush).
He gas flow:
- Line 1: Aux-3—V1-4—V1-3—V1-6—V1-5—V2-3—V2-4—capillary column—V2-2—V2-1—FID
- Line 2: Aux-4—V1-2—V1-1—V3-3—V3-4—V3-1—V3-2—V4-3—V4-2—V4-5—V4-4—out
- Line 3: Back inlet—V4-6—V4-7—MolSieve column—V4-1—V4-10—vent
Backflush:
- Line 3: Front inlet—V3-5—V3-6—HaySep R column—V3-8—V3-7—V4-9—V4-8—TCD
Figure 15. NGA in Run Mode: 8.50–9.09 min after starting run.
Run Mode at 10.0 min (close Valves V1 and V2)
He (green) and sample gas (red) flows in the NGA 9.09–10.0 min after start of run. After V1 and V2 close, He flow returns to standby mode.
He gas flow:
- Line 1: Aux-3—V1-4—V1-5—V2-3—V2-2—capillary column—V2-4—V2-1—FID
- Line 2: Aux-4—V1-2—V1-3—V1-6—V1-1—V3-3—V3-4—V3-1—V3-2—V4-3—V4-2—V4-5—V4-4—out
- Line 3: Front inlet—V3-5—V3-6—HaySep R column—V3-8—V3-7—V4-9—V4-8—TCD
- Line 4: Back inlet—V4-6—V4-7—MolSieve column—V4-1—V4-10—vent
Figure 16. NGA in Run Mode: 9.09–10.0 min after starting run.
NGA Startup
The chromatography application ChemStation controls GC data acquisition and processing. It can be run either online or offline. Offline mode can be run without communication with the GCs, so it is useful for reintegrating or reprocessing chromatograms. Online mode requires communication with the GC.
- Turn on the GC. WARNING: Before turning on the GC, make sure the gas lines are open.
The 6890 GC performs a comprehensive self-evaluation and shows real-time diagnostics on the screen. Warning, Fault, or Bad Main Board & Fatal Error messages require troubleshooting before moving to the next step (see Maintenance & Troubleshooting (HP6890GC)). - Click the Agilent Control Panel, then select NGA1 or NGA2, then Launch to start ChemStation. The Method and Run Control window opens. At startup, ChemStation uses the method last used (shown on the main screen). In addition, the GC LCD shows the loaded settings from ChemStation. Settings changed on the GC using the GC control panel are also made to ChemStation, and parameter changes entered into ChemStation are made to the GC. ChemStation will prompt to save changes.
To load a different method in Chemstation:
- Click Method > Load Method, select the method from the list, and press OK or
- Click the Method tab on the left side of the window and select a method to load
- The system automatically loads the new method selected in ChemStation to the appropriate GC. Oven and detector temperatures may increase immediately after a new method is loaded, and the FID will ignite when the detector temperature reaches 150°C. Sometimes, the GC beeps because the FID flame is out, especially after a long idle period. See Maintenance & Troubleshooting (HP6890GC).
- If the GC has been turned off for longer than a week, then bake the column for 8 hr with gas flowing (manually set the oven temperature to 175°C for GC3 or 275°C for NGA).
Instrument Operation
Before unknown samples can be analyzed for headspace gases, each GC system must have a valid calibration curve and the calibration curve must have been verified using a calibration verification standard.
Creating a Calibration Curve
1 | Prepare 5–7 registered standard gases. |
2 | Activate NGA LIMS uploader located at Start > Program Files > IODP > MegaUploadaTron. The uploader must be activated before the calibration is run. |
3 | In the ChemStation Main menu, click Run Control > Sample Info. |
4 | Fill in the specific fields on the screen as follows:
|
5 | Slowly inject 5000 µL of the first standard gas and observe the floating ball in the flow meter move upward. |
6 | When the ball in the flow meter indicates flow has fallen to just above 0 (is about to hit 0), press the Start button on the control panel of the GC. |
7 | When the run has finished, open the Data Analysis screen in ChemStation and click Calibration. |
8 | On the Main ChemStation menu, select Calibration > Recalibrate. |
9 | On the Recalibration screen, select Level # and Replace (or Average) as applicable for that level. |
10 | Repeat Steps 5–9 for 3 replicate standards (CH4: A 25%, B = 50%, C 75%, D = 99%). |
11 | Click OK to change the calibration value. For NGA calibration, the same standard can be applied to both the appropriate TCD and FID level; you do not need separate standards for TCD and FID. |
Running a Calibration Verification Standard
1 | Ensure the uploader is activated and the CV standard is registered in LIMS. |
2 | Click Run Control in the main menu of ChemStation and select Sample Info. |
3 | Fill in the specific section on the window as follows:
|
4 | Prepare the CV standard at approximately the mid-point concentration of the curve. |
5 | Slowly inject 5000 µL of the standard gas, keeping the outflow rate <80 mL/min. |
6 | Press Start on the GC control panel when the flow meter is just above 0. |
7 | When the run is finished, the report will automatically display the values. Click Upload in the uploader to submit the data to LIMS. |
Running a Blank
1 | To run a blank, in the Main menu click RunControl > Sample Info. |
2 | Fill in the following fields:
|
3 | Prepare laboratory air (5000 µL) and inject it into the GC in the same fashion as the standards above when the ChemStation software shows Ready. |
4 | Press the Start button on the GC control panel to start the run. |
5 | Confirm the chromatogram on the screen shows no peaks. If peaks are present, the system contamination must be found (injector, detector, sample loop, etc.). |
Running a Gas Sample
1 | Ensure the uploader has been activated. |
2 | Click Run Control in the main menu of ChemStation and select Sample Info. |
3 | Fill in the specific section on the window as follows:
|
4 | Prepare a headspace or void gas sample. |
5 | Slowly inject 5000 µL of the gas sample, keeping the maximum gas outflow <80 mL/min. |
6 | Press Start on the GC control panel when the ball on the flow meter is just above 0. |
Sample Preparation
There are two primary sample types used for natural gas analysis.
Headspace gas, which is obtained from core samples by heating a sample to ~70°C.
Void gas collected with a vacuum vial.
Occasionally, cores that come on deck have voids with large amounts of free gas. Free gas must be sampled using a sampling device that penetrates the liner and provides a channel for the gas to be drawn into a gas-tight syringe, vacuum vial, or gas sampling bag.
Headspace Gas
Collect samples from a freshly cut core section at a position within 0.5 inch of the inner side of the core liner (where sample has not been disturbed by contact with drilling fluid or core liner). In addition, the sample must be taken prior to the use of acetone or any other organic solvent in the catwalk area.
The curator authorizes the sampling plan before coring; therefore, the chemistry specialist must know the catwalk sampling plan before taking samples.
1 | Locate a freshly sectioned core (consult with the curator). |
2 | Gently push the sample coring tool into the core section slightly inward of the edge. |
3 | Gently pull out the tool. If the sample recovery (% of coring tool with sample) is >80% (~5–7 cm3), proceed; otherwise repeat Steps 1 and 2. |
4 | Place the open end of the sample coring tool over a clean headspace gas vial and use the plunger to push the sediment into the vial. |
5 | Immediately place a gasket with a crimp top over the vial and crimp shut. |
6 | After sealing the vial, immediately write down the sampling interval, location, and any other information for the sample that was just taken. Generate a proper label and apply it to the vial as soon as possible. |
7 | Place the vial with the sample in a 70°C oven for 30 min to degas the sediment (use timer). |
8 | Inject extracted gas sample into the GC using syringe (see |
Collecting a Void Gas Sample
1 | Use the puncture tool to make a hole in the core liner to make a channel for the gas. |
2 | Quickly collect a free gas sample from the small hole with a syringe. |
3 | Immediately introduce the gas sample into the GC instruments in the same manner as the headspace samples. |
Data Upload
Data is uploaded from the NGA via a multi-step process:
- When the run is complete, a macro (NGA_MUT.MAC) is automatically called, as configured in the method file. The macro copies information from the method directory to C:\LIMS\NGA\data
- An in-house program called MegaUploadaTron (MUT) monitors the data folder locations and when a file is copied in initiates the next steps of the upload process.
- The file is opened and read, and data points are uploaded to LIMS
- The data files are compressed (zipped) and uploaded as well
- LIMS analysis codes are NGAFID, and NGATCD
- After the upload to LIMS is complete, MUT moves the data files to an archive directory at C:\DATA\GC3\archive or C:\DATA\NGA\archive.
- If an upload error occurs, the files are not archived and MUT will report the error in the main window (only).
Quality Assurance/Quality Control
QA/QC for GC3/NGA analysis consists of instrument calibration and continuing calibration verification using check standards, instrument blanks, and replicate samples.
Analytical Batch
An analytical batch is a method-defined number of samples with which QC samples including calibration verification, blank, and replicate samples are run. Samples are implicitly grouped into batches based on the spacing between CV samples.
QC Samples
Blank
- The blank determines the level of contamination originating from the laboratory environment (air) and sample path in the GC (injection port with screen, sample loop, and separation column).
- Run a blank with each batch of samples by injecting 5 mL of ambient laboratory air into the GC using the same syringe used to inject headspace gas samples.
- All calibrated values other than O2 and N2 should be nondetectable in the blank. If aberrant peaks appear, bake the column for 8 hr and repeat the blank analysis.
Calibration Sample
- Five to seven levels of calibration samples (standard gases) are used to create a calibration curve, which is saved with the measurement data (see Instrument Calibration/Calibration Verification).
- Correlation coefficient values for calibration curves should be 0.99 or better, except O2 and N2, which should be 0.95 or better.
Calibration Verification (CV) Sample
- Select one of the 5–7 calibration samples from the calibration curve for the calibration verification sample.
- Run a CV sample at least every shift that samples are taken (see Instrument Calibration/Calibration Verification).
- The CV should fall within 3% of the calibrated value; O2 and N2 should be within 10% of the calibrated value.
Control Limits
For a system to be considered in control, all QA/QC samples (blank and calibration verification) must be in control.
In Control
A QA/QC sample is in control when the sample analysis result is within a certain tolerance of acceptable limits (see above). Calibration verification samples should be within acceptable limits of the actual value calculated against the calibration curve (see Calibration Verification (CV) Sample) and blanks should be within acceptable limits of background levels of headspace hydrocarbons and gases (see Blank). When the system is in control, as indicated by acceptable results on QA/QC samples, analytical results for unknown samples are considered to be reliable.
Out of Control
If the control limits are exceeded, the instrument system is considered out of control and all samples in the current analytical batch are invalid and must be rerun after the system is proved to be in control.
LIMS Integration
LIMS Components
Analysis | Component | Unit | Description |
|---|---|---|---|
GC3 | dat_asman_id | — | Serial number of chromatographic data file in digital asset management database (ASMAN) |
dat_filename | — | File name of chromatographic data file containing measurements | |
run_test | — | Test number of related calibration or QA/QC test | |
propene | ppmv | Relative concentration of propene in the sample | |
propane | ppmv | Relative concentration of propane in the sample | |
ethene | ppmv | Relative concentration of ethene in the sample | |
ethane | ppmv | Relative concentration of ethane in the sample | |
methane | ppmv | Relative concentration of methane in the sample | |
GC3_QAQC | dat_asman_id | — | Serial number of chromatographic data file in ASMAN |
dat_filename | — | File name of chromatographic data file containing measurements | |
run_test | — | Test number of related calibration or QA/QC test | |
propene | ppmv | Relative concentration of propene in the sample | |
propane | ppmv | Relative concentration of propane in the sample | |
ethene | ppmv | Relative concentration of ethene in the sample | |
ethane | ppmv | Relative concentration of ethane in the sample | |
methane | ppmv | Relative concentration of methane in the sample | |
GC3_QCAL | mtd_asman_id | — | Serial number of chromatographic method in ASMAN |
mtd_filename | — | File name of the chromatographic method file containing measurements | |
ethene_corr2 | R2 | Ethene calibration coefficient | |
ethene_intercept | — | Intercept of ethene calibration curve | |
ethene_slope | — | Slope of ethene calibration curve | |
ethane_corr2 | R2 | Ethane calibration coefficient | |
ethane_intercept | — | Intercept of ethane calibration curve | |
ethane_slope | — | Slope of ethane calibration curve | |
propene_corr2 | R2 | Propene calibration coefficient | |
propene_intercept | — | Intercept of propene calibration curve | |
propene_slope | — | Slope of propene calibration curve | |
propane_corr2 | R2 | Propane calibration coefficient | |
propane_intercept | — | Intercept of propane calibration curve | |
propane_slope | — | Slope of propene calibration curve | |
methane_corr2 | R2 | Methane calibration coefficient | |
methane_intercept | — | Intercept of methane calibration curve | |
methane_slope | — | Slope of methane calibration curve | |
NGAFID | dat_asman_id | — | Serial number of chromatographic data file in ASMAN |
dat_filename | — | File name of chromatographic data file containing measurements | |
run_test | — | Test number of related calibration or QA/QC test | |
iso_butane | ppmv | Concentration of iso_butane in a sample | |
iso_heptane | ppmv | Concentration of iso_heptane in a sample | |
iso_hexane | ppmv | Concentration of iso_hexane in a sample | |
iso_pentane | ppmv | Concentration of iso_pentane in a sample | |
n_butane | ppmv | Concentration of n_butane in a sample | |
n_heptane | ppmv | Concentration of n_heptane in a sample | |
n_hexane | ppmv | Concentration of n_hexane in a sample | |
n_pentane | ppmv | Concentration of n_pentane in a sample | |
ethane_ethene | ppmv | Concentration of ethane + ethene in a sample | |
propane_propene | ppmv | Concentration of propane + propene in a sample | |
methane | ppmv | Concentration of methane in a sample | |
NGAFID_QA | dat_asman_id | — | Serial number of chromatographic data file in ASMAN |
dat_filename | — | File name of chromatographic data file containing measurements | |
run_test | — | Test number of related calibration or QA/QC test | |
iso_butane | ppmv | Concentration of iso_butane in a sample | |
iso_heptane | ppmv | Concentration of iso_heptane in a sample | |
iso_hexane | ppmv | Concentration of iso_hexane in a sample | |
iso_pentane | ppmv | Concentration of iso_pentane in a sample | |
n_butane | ppmv | Concentration of n_butane in a sample | |
n_heptane | ppmv | Concentration of n_heptane in a sample | |
n_hexane | ppmv | Concentration of n_hexane in a sample | |
n_pentane | ppmv | Concentration of n_pentane in a sample | |
ethane_ethene | ppmv | Concentration of ethane + ethene in a sample | |
propane_propene | ppmv | Concentration of propane + propene in a sample | |
methane | ppmv | Concentration of methane in a sample | |
NGAFID_QC | mtd_asman_id | — | Serial number of chromatographic method in ASMAN |
mtd_filename | — | File name of the chromatographic method file containing measurements | |
iso_butane_corr2 | R2 | Iso-butane calibration coefficient | |
iso_butane_intercept | — | Intercept of iso-butane calibration curve | |
iso_butane_slope | — | Slope of iso-butane calibration curve | |
iso_heptane_corr2 | R2 | Iso-heptane calibration coefficient | |
iso_heptane_intercept | — | Intercept of iso-heptane calibration curve | |
iso_heptane_slope | — | Slope of iso-heptane calibration curve | |
iso_hexane_corr2 | R2 | Iso-hexane calibration coefficient | |
iso_hexane_intercept | — | Intercept of iso-hexane calibration curve | |
iso_hexane_slope | — | Slope of iso-hexane calibration curve | |
iso_pentane_corr2 | R2 | Iso-pentane calibration coefficient | |
iso_pentane_intercept | — | Intercept of iso-pentane calibration curve | |
iso_pentane_slope | — | Slope of iso-pentane calibration curve | |
n_butane_corr2 | R2 | n-butane calibration coefficient | |
n_butane_intercept | — | Intercept of n-butane calibration curve | |
n_butane_slope | — | Slope of n-butane calibration curve | |
n_heptane_corr2 | R2 | n-heptane calibration coefficient | |
n_heptane_intercept | — | Intercept of n-heptane calibration curve | |
n_heptane_slope | — | Slope of n-heptane calibration curve | |
n_hexane_corr2 | R2 | n-hexane calibration coefficient | |
n_hexane_intercept | — | Intercept of n-hexane calibration curve | |
n_hexane_slope | — | Slope of n-hexane calibration curve | |
n_pentane_corr2 | R2 | n-pentane calibration coefficient | |
n_pentane_intercept | — | Intercept of n-pentane calibration curve | |
n_pentane_slope | — | Slope of n-pentane calibration curve | |
ethane_ethene_corr2 | R2 | Ethane + ethene calibration coefficient | |
ethane_ethene_intercept | — | Intercept of ethane + ethene calibration curve | |
ethane_ethene_slope | — | Slope of ethane + ethene calibration curve | |
propane_propene_corr2 | R2 | Propane + propene calibration coefficient | |
propane_propene_intercept | — | Intercept of propane + propene calibration curve | |
propane_propene_slope | — | Slope of propane + propene calibration curve | |
NGAFID_QC | methane_corr2 | R2 | Methane calibration coefficient |
methane_intercept | — | Intercept of methane calibration curve | |
methane_slope | — | Slope of methane calibration curve | |
NGATCD | dat_asman_id | — | Serial number of chromatographic data file in ASMAN |
dat_filename | — | File name of chromatographic data file containing measurements | |
run_test | — | Test number of related calibration or QA/QC test | |
carbon_dioxide | ppmv | Concentration of carbon dioxide in a sample | |
ethane | ppmv | Concentration of ethane in a sample | |
ethene | ppmv | Concentration of ethene in a sample | |
hydrogen_sulfide | ppmv | Concentration of hydrogen sulfide in a sample | |
methane | ppmv | Concentration of methane in a sample | |
nitrogen | ppmv | Concentration of nitrogen in a sample | |
oxygen | ppmv | Concentration of oxygen in a sample | |
propane | ppmv | Concentration of propane in a sample | |
propene | ppmv | Concentration of propene in a sample |
Health, Safety & Environment
Safety
- The following parts are dangerously hot. Avoid touching these areas and cool completely to room temperature before servicing them:
- Inlets
- Oven
- Detectors
- Column nuts
- Be careful when working behind the instrument; during cooldown cycle the oven emits hot exhaust that can cause burns.
- Do not place temperature-sensitive items (e.g., gas cylinders, chemicals, regulators, and plastic tubing) in the path of the heated exhaust.
- Insulation around inlets, detectors, and valve box contains refractory ceramic fibers. Avoid inhaling particles and wear personal protective equipment including gloves, safety glasses, and dust/mist respirator when working in these areas.
- Do not leave flammable gas flows on if GC will be unmonitored for long periods of time (however, leave carrier gas on for column flow).
- Always operate the instrument with the cover properly installed.
Maintenance & Troubleshooting (HP6890GC)
Use the Status and Info keys on the GC keypad as a first check when something goes wrong.
Troubleshooting
Faults
- Beeping instrument (cancel beep by pressing Clear on the instrument keyboard)
- One beep: instrument fault, warning, or shutdown
- Series of beeps: gas flow cannot reach setpoint and flow will be shut down after 1–2 min
- Continuous beep: thermal shutdown
- Blinking setpoint on GC display
- Control table setpoint blinking: gas flow, valve, or oven shutdown
- Detector On/Off line blinking: pneumatics or detector failure
- Instrument screen messages (press Clear to remove message)
- Caution: configuration problems
- Error: setpoint out of range or incorrect hardware
- Popup: shutdown, fault, or warning (see error table)
- FID will not stay lit
- Make sure the dessicant in the hydrogen generator is not saturated with water (replace/recharge as necessary).
- Check water level in hydrogen generator
Leak Checking
When checking for leaks, check both parts of the system:
- External leaks: gas cylinders, gas purifiers/traps, regulator fittings, supply shutoff valves, GC supply fittings.
- GC leaks: inlets, purge vents; column connections to inlets, detectors, valves, splitters, adapters, and unions.
For safe leak-checking and flow measurement:
- Purge flowmeters with inert gas after measuring a flammable gas (such as hydrogen).
- Measure gases individually.
- Turn off detectors while measuring gas flows.
Column Size and Carrier Gas Flow Rate
Column type | Column ID | Carrier gas flow rate (mL/min) |
|
Hydrogen | Helium | ||
Packed | 1/8 inch | 30 | |
1/4 inch | 60 | ||
Capillary | 50 µm | 0.5 | 0.4 |
100 µm | 1.0 | 0.8 | |
200 µm | 2.0 | 1.6 | |
250 µm | 2.5 | 2.0 | |
320 µm | 3.2 | 2.6 | |
530 µm | 5.3 | 4.2 | |
These flow rates at normal temperature and pressure (25°C and 1 atm) are recommended for all column temperatures. |
LIMS Component Tables
The following tables represent all of the LIMS components for the following analysis codes:
- NGAFID - C1-C7 hydrocarbons by flame ionization detector
- NGATCD - C1-C3 hydrocarbons and fixed gases by thermal conductivity detector
- GC3 (legacy) - C1-C3 hydrocarbons by flame ionization detector; this system is no longer aboard, but at the time was faster than the previous version of the NGA; the Agilent 7890 NGA GCs are fast enough to make the separate GC3 unnecessary
| ANALYSIS | TABLE | NAME | ABOUT TEXT |
| NGAFID | SAMPLE | Exp | Exp: expedition number |
| NGAFID | SAMPLE | Site | Site: site number |
| NGAFID | SAMPLE | Hole | Hole: hole number |
| NGAFID | SAMPLE | Core | Core: core number |
| NGAFID | SAMPLE | Type | Type: type indicates the coring tool used to recover the core (typical types are F, H, R, X). |
| NGAFID | SAMPLE | Sect | Sect: section number |
| NGAFID | SAMPLE | A/W | A/W: archive (A) or working (W) section half. |
| NGAFID | SAMPLE | text_id | Text_ID: automatically generated database identifier for a sample, also carried on the printed labels. This identifier is guaranteed to be unique across all samples. |
| NGAFID | SAMPLE | sample_number | Sample Number: automatically generated database identifier for a sample. This is the primary key of the SAMPLE table. |
| NGAFID | SAMPLE | label_id | Label identifier: automatically generated, human readable name for a sample that is printed on labels. This name is not guaranteed unique across all samples. |
| NGAFID | SAMPLE | sample_name | Sample name: short name that may be specified for a sample. You can use an advanced filter to narrow your search by this parameter. |
| NGAFID | SAMPLE | x_sample_state | Sample state: Single-character identifier always set to "W" for samples; standards can vary. |
| NGAFID | SAMPLE | x_project | Project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises |
| NGAFID | SAMPLE | x_capt_loc | Captured location: "captured location," this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2 |
| NGAFID | SAMPLE | location | Location: location that sample was taken; this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2 |
| NGAFID | SAMPLE | x_sampling_tool | Sampling tool: sampling tool used to take the sample (e.g., syringe, spatula) |
| NGAFID | SAMPLE | changed_by | Changed by: username of account used to make a change to a sample record |
| NGAFID | SAMPLE | changed_on | Changed on: date/time stamp for change made to a sample record |
| NGAFID | SAMPLE | sample_type | Sample type: type of sample from a predefined list (e.g., HOLE, CORE, LIQ) |
| NGAFID | SAMPLE | x_offset | Offset (m): top offset of sample from top of parent sample, expressed in meters. |
| NGAFID | SAMPLE | x_offset_cm | Offset (cm): top offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset, converted to cm) |
| NGAFID | SAMPLE | x_bottom_offset_cm | Bottom offset (cm): bottom offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset + length, converted to cm) |
| NGAFID | SAMPLE | x_diameter | Diameter (cm): diameter of sample, usually applied only to CORE, SECT, SHLF, and WRND samples; however this field is null on both Exp. 390 and 393, so it is no longer populated by Sample Master |
| NGAFID | SAMPLE | x_orig_len | Original length (m): field for the original length of a sample; not always (or reliably) populated |
| NGAFID | SAMPLE | x_length | Length (m): field for the length of a sample [as entered upon creation] |
| NGAFID | SAMPLE | x_length_cm | Length (cm): field for the length of a sample. This is a calculated field (length, converted to cm). |
| NGAFID | SAMPLE | status | Status: single-character code for the current status of a sample (e.g., active, canceled) |
| NGAFID | SAMPLE | old_status | Old status: single-character code for the previous status of a sample; used by the LIME program to restore a canceled sample |
| NGAFID | SAMPLE | original_sample | Original sample: field tying a sample below the CORE level to its parent HOLE sample |
| NGAFID | SAMPLE | parent_sample | Parent sample: the sample from which this sample was taken (e.g., for PWDR samples, this might be a SHLF or possibly another PWDR) |
| NGAFID | SAMPLE | standard | Standard: T/F field to differentiate between samples (standard=F) and QAQC standards (standard=T) |
| NGAFID | SAMPLE | login_by | Login by: username of account used to create the sample (can be the LIMS itself [e.g., SHLFs created when a SECT is created]) |
| NGAFID | SAMPLE | login_date | Login date: creation date of the sample |
| NGAFID | SAMPLE | legacy | Legacy flag: T/F indicator for when a sample is from a previous expedition and is locked/uneditable on this expedition |
| NGAFID | TEST | test changed_on | TEST changed on: date/time stamp for a change to a test record. |
| NGAFID | TEST | test status | TEST status: single-character code for the current status of a test (e.g., active, in process, canceled) |
| NGAFID | TEST | test old_status | TEST old status: single-character code for the previous status of a test; used by the LIME program to restore a canceled test |
| NGAFID | TEST | test test_number | TEST test number: automatically generated database identifier for a test record. This is the primary key of the TEST table. |
| NGAFID | TEST | test date_received | TEST date received: date/time stamp for the creation of the test record. |
| NGAFID | TEST | test instrument | TEST instrument [instrument group]: field that describes the instrument group (most often this applies to loggers with multiple sensors); often obscure (e.g., user_input) |
| NGAFID | TEST | test analysis | TEST analysis: analysis code associated with this test (foreign key to the ANALYSIS table) |
| NGAFID | TEST | test x_project | TEST project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises |
| NGAFID | TEST | test sample_number | TEST sample number: the sample_number of the sample to which this test record is attached; a foreign key to the SAMPLE table |
| NGAFID | CALCULATED | Top depth CSF-A (m) | Top depth CSF-A (m): position of observation expressed relative to the top of the hole. |
| NGAFID | CALCULATED | Bottom depth CSF-A (m) | Bottom depth CSF-A (m): position of observation expressed relative to the top of the hole. |
| NGAFID | CALCULATED | Top depth CSF-B (m) | Top depth [other] (m): position of observation expressed relative to the top of the hole. The location is presented in a scale selected by the science party or the report user. |
| NGAFID | CALCULATED | Bottom depth CSF-B (m) | Bottom depth [other] (m): position of observation expressed relative to the top of the hole. The location is presented in a scale selected by the science party or the report user. |
| NGAFID | RESULT | data_asman_id | RESULT data ASMAN_ID: serial number of the ASMAN link for the data file (binary format) |
| NGAFID | RESULT | data_filename | RESULT data filename: file name of the data file (binary format) |
| NGAFID | RESULT | ethane (ppmv) | RESULT ethane (ppmv): ethane (C2H6, also shown as C2) concentration of the headspace or void space |
| NGAFID | RESULT | ethene (ppmv) | RESULT ethene (ppmv): ethene (C2H4, also shown as C2=) concentration of the headspace or void space |
| NGAFID | RESULT | iso_butane (ppmv) | RESULT iso-butane (ppmv): iso-butane (HC(CH3)3) concentration of the headspace or void space; also known as 2-methyl propane |
| NGAFID | RESULT | iso_heptane (ppmv) | RESULT iso-heptane (ppmv): iso-heptane (HC(CH3)6) concentration of the headspace or void space; also known as 2-methyl hexane |
| NGAFID | RESULT | iso_hexane (ppmv) | RESULT iso-hexane (ppmv): iso-hexane (HC(CH3)5) concentration of the headspace or void space; also known as 2-methyl pentane |
| NGAFID | RESULT | iso_pentane (ppmv) | RESULT iso-pentane (ppmv): iso-pentane (HC(CH3)4) concentration of the headspace or void space; also known as 2-methyl butane |
| NGAFID | RESULT | methane (ppmv) | RESULT methane (ppmv): methane (CH4, also shown as C1) concentration of the headspace or void space |
| NGAFID | RESULT | method_asman_id | RESULT method ASMAN_ID: serial number of the ASMAN link for the method file (binary format) |
| NGAFID | RESULT | method_filename | RESULT method filename: file name of the method file (binary format) |
| NGAFID | RESULT | n_butane (ppmv) | RESULT n-butane (ppmv): n-butane (C4H10) concentration of the headspace or void space |
| NGAFID | RESULT | n_heptane (ppmv) | RESULT n-heptane (ppmv): n-heptane (C7H16) concentration of the headspace or void space |
| NGAFID | RESULT | n_hexane (ppmv) | RESULT n-hexane (ppmv): n-hexane (C6H14) concentration of the headspace or void space |
| NGAFID | RESULT | n_pentane (ppmv) | RESULT n-pentane (ppmv): n-pentane (C5H12) concentration of the headspace or void space |
| NGAFID | RESULT | n_propane | RESULT n-propane (ppmv): n-propane (C3H8) concentration of the headspace or void space |
| NGAFID | RESULT | propene (ppmv) | RESULT propene (ppmv): propene (C3H6, also shown as C3=) concentration of the headspace or void space |
| NGAFID | RESULT | run_test | RESULT run test: number of the run, not always populated |
| NGAFID | SAMPLE | sample description | SAMPLE comment: contents of the SAMPLE.description field, usually shown on reports as "Sample comments" |
| NGAFID | TEST | test test_comment | TEST comment: contents of the TEST.comment field, usually shown on reports as "Test comments" |
| NGAFID | RESULT | result comments | RESULT comment: contents of a result parameter with name = "comment," usually shown on reports as "Result comments" |
| ANALYSIS | TABLE | NAME | ABOUT TEXT |
| NGATCD | SAMPLE | Exp | Exp: expedition number |
| NGATCD | SAMPLE | Site | Site: site number |
| NGATCD | SAMPLE | Hole | Hole: hole number |
| NGATCD | SAMPLE | Core | Core: core number |
| NGATCD | SAMPLE | Type | Type: type indicates the coring tool used to recover the core (typical types are F, H, R, X). |
| NGATCD | SAMPLE | Sect | Sect: section number |
| NGATCD | SAMPLE | A/W | A/W: archive (A) or working (W) section half. |
| NGATCD | SAMPLE | text_id | Text_ID: automatically generated database identifier for a sample, also carried on the printed labels. This identifier is guaranteed to be unique across all samples. |
| NGATCD | SAMPLE | sample_number | Sample Number: automatically generated database identifier for a sample. This is the primary key of the SAMPLE table. |
| NGATCD | SAMPLE | label_id | Label identifier: automatically generated, human readable name for a sample that is printed on labels. This name is not guaranteed unique across all samples. |
| NGATCD | SAMPLE | sample_name | Sample name: short name that may be specified for a sample. You can use an advanced filter to narrow your search by this parameter. |
| NGATCD | SAMPLE | x_sample_state | Sample state: Single-character identifier always set to "W" for samples; standards can vary. |
| NGATCD | SAMPLE | x_project | Project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises |
| NGATCD | SAMPLE | x_capt_loc | Captured location: "captured location," this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2 |
| NGATCD | SAMPLE | location | Location: location that sample was taken; this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2 |
| NGATCD | SAMPLE | x_sampling_tool | Sampling tool: sampling tool used to take the sample (e.g., syringe, spatula) |
| NGATCD | SAMPLE | changed_by | Changed by: username of account used to make a change to a sample record |
| NGATCD | SAMPLE | changed_on | Changed on: date/time stamp for change made to a sample record |
| NGATCD | SAMPLE | sample_type | Sample type: type of sample from a predefined list (e.g., HOLE, CORE, LIQ) |
| NGATCD | SAMPLE | x_offset | Offset (m): top offset of sample from top of parent sample, expressed in meters. |
| NGATCD | SAMPLE | x_offset_cm | Offset (cm): top offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset, converted to cm) |
| NGATCD | SAMPLE | x_bottom_offset_cm | Bottom offset (cm): bottom offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset + length, converted to cm) |
| NGATCD | SAMPLE | x_diameter | Diameter (cm): diameter of sample, usually applied only to CORE, SECT, SHLF, and WRND samples; however this field is null on both Exp. 390 and 393, so it is no longer populated by Sample Master |
| NGATCD | SAMPLE | x_orig_len | Original length (m): field for the original length of a sample; not always (or reliably) populated |
| NGATCD | SAMPLE | x_length | Length (m): field for the length of a sample [as entered upon creation] |
| NGATCD | SAMPLE | x_length_cm | Length (cm): field for the length of a sample. This is a calculated field (length, converted to cm). |
| NGATCD | SAMPLE | status | Status: single-character code for the current status of a sample (e.g., active, canceled) |
| NGATCD | SAMPLE | old_status | Old status: single-character code for the previous status of a sample; used by the LIME program to restore a canceled sample |
| NGATCD | SAMPLE | original_sample | Original sample: field tying a sample below the CORE level to its parent HOLE sample |
| NGATCD | SAMPLE | parent_sample | Parent sample: the sample from which this sample was taken (e.g., for PWDR samples, this might be a SHLF or possibly another PWDR) |
| NGATCD | SAMPLE | standard | Standard: T/F field to differentiate between samples (standard=F) and QAQC standards (standard=T) |
| NGATCD | SAMPLE | login_by | Login by: username of account used to create the sample (can be the LIMS itself [e.g., SHLFs created when a SECT is created]) |
| NGATCD | SAMPLE | login_date | Login date: creation date of the sample |
| NGATCD | SAMPLE | legacy | Legacy flag: T/F indicator for when a sample is from a previous expedition and is locked/uneditable on this expedition |
| NGATCD | TEST | test changed_on | TEST changed on: date/time stamp for a change to a test record. |
| NGATCD | TEST | test status | TEST status: single-character code for the current status of a test (e.g., active, in process, canceled) |
| NGATCD | TEST | test old_status | TEST old status: single-character code for the previous status of a test; used by the LIME program to restore a canceled test |
| NGATCD | TEST | test test_number | TEST test number: automatically generated database identifier for a test record. This is the primary key of the TEST table. |
| NGATCD | TEST | test date_received | TEST date received: date/time stamp for the creation of the test record. |
| NGATCD | TEST | test instrument | TEST instrument [instrument group]: field that describes the instrument group (most often this applies to loggers with multiple sensors); often obscure (e.g., user_input) |
| NGATCD | TEST | test analysis | TEST analysis: analysis code associated with this test (foreign key to the ANALYSIS table) |
| NGATCD | TEST | test x_project | TEST project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises |
| NGATCD | TEST | test sample_number | TEST sample number: the sample_number of the sample to which this test record is attached; a foreign key to the SAMPLE table |
| NGATCD | CALCULATED | Top depth CSF-A (m) | Top depth CSF-A (m): position of observation expressed relative to the top of the hole. |
| NGATCD | CALCULATED | Bottom depth CSF-A (m) | Bottom depth CSF-A (m): position of observation expressed relative to the top of the hole. |
| NGATCD | CALCULATED | Top depth CSF-B (m) | Top depth [other] (m): position of observation expressed relative to the top of the hole. The location is presented in a scale selected by the science party or the report user. |
| NGATCD | CALCULATED | Bottom depth CSF-B (m) | Bottom depth [other] (m): position of observation expressed relative to the top of the hole. The location is presented in a scale selected by the science party or the report user. |
| NGATCD | RESULT | carbon_dioxide (ppmv) | RESULT carbon dioxide (ppmv): concentration of CO2 in the headspace or void space |
| NGATCD | RESULT | data_asman_id | RESULT data ASMAN_ID: serial number of the ASMAN link for the data file (binary format) |
| NGATCD | RESULT | data_filename | RESULT data filename: file name of the data file (binary format) |
| NGATCD | RESULT | ethane (ppmv) | RESULT ethane (ppmv): ethane (C2H6, also shown as C2) concentration of the headspace or void space |
| NGATCD | RESULT | ethene (ppmv) | RESULT ethene (ppmv): ethene (C2H4, also shown as C2=) concentration of the headspace or void space |
| NGATCD | RESULT | hydrogen_sulfide (ppmv) | RESULT hydrogen sulfide (ppmv): concentration of H2S in the headspace or void space |
| NGATCD | RESULT | methane (ppmv) | RESULT methane (ppmv): methane (CH4, also shown as C1) concentration of the headspace or void space |
| NGATCD | RESULT | method_asman_id | RESULT method ASMAN_ID: serial number of the ASMAN link for the method file (binary format) |
| NGATCD | RESULT | method_filename | RESULT method filename: file name of the method file (binary format) |
| NGATCD | RESULT | nitrogen (ppmv) | RESULT nitrogen (ppmv): concentration of N2 in the headspace or void space |
| NGATCD | RESULT | oxygen (ppmv) | RESULT oxygen (ppmv): concentration of O2 in the headspace or void space |
| NGATCD | RESULT | propane (ppmv) | RESULT n-propane (ppmv): propane (C3H8) concentration of the headspace or void space |
| NGATCD | RESULT | propene (ppmv) | RESULT propene (ppmv): propene (C3H6, also shown as C3=) concentration of the headspace or void space |
| NGATCD | RESULT | run_test | RESULT run test: number of the run, not always populated |
| NGATCD | SAMPLE | sample description | SAMPLE comment: contents of the SAMPLE.description field, usually shown on reports as "Sample comments" |
| NGATCD | TEST | test test_comment | TEST comment: contents of the TEST.comment field, usually shown on reports as "Test comments" |
| NGATCD | RESULT | result comments | RESULT comment: contents of a result parameter with name = "comment," usually shown on reports as "Result comments" |
| ANALYSIS | TABLE | NAME | ABOUT TEXT |
| GC3 | SAMPLE | Exp | Exp: expedition number |
| GC3 | SAMPLE | Site | Site: site number |
| GC3 | SAMPLE | Hole | Hole: hole number |
| GC3 | SAMPLE | Core | Core: core number |
| GC3 | SAMPLE | Type | Type: type indicates the coring tool used to recover the core (typical types are F, H, R, X). |
| GC3 | SAMPLE | Sect | Sect: section number |
| GC3 | SAMPLE | A/W | A/W: archive (A) or working (W) section half. |
| GC3 | SAMPLE | text_id | Text_ID: automatically generated database identifier for a sample, also carried on the printed labels. This identifier is guaranteed to be unique across all samples. |
| GC3 | SAMPLE | sample_number | Sample Number: automatically generated database identifier for a sample. This is the primary key of the SAMPLE table. |
| GC3 | SAMPLE | label_id | Label identifier: automatically generated, human readable name for a sample that is printed on labels. This name is not guaranteed unique across all samples. |
| GC3 | SAMPLE | sample_name | Sample name: short name that may be specified for a sample. You can use an advanced filter to narrow your search by this parameter. |
| GC3 | SAMPLE | x_sample_state | Sample state: Single-character identifier always set to "W" for samples; standards can vary. |
| GC3 | SAMPLE | x_project | Project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises |
| GC3 | SAMPLE | x_capt_loc | Captured location: "captured location," this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2 |
| GC3 | SAMPLE | location | Location: location that sample was taken; this field is usually null and is unnecessary because any sample captured on the JR has a sample_number ending in 1, and GCR ending in 2 |
| GC3 | SAMPLE | x_sampling_tool | Sampling tool: sampling tool used to take the sample (e.g., syringe, spatula) |
| GC3 | SAMPLE | changed_by | Changed by: username of account used to make a change to a sample record |
| GC3 | SAMPLE | changed_on | Changed on: date/time stamp for change made to a sample record |
| GC3 | SAMPLE | sample_type | Sample type: type of sample from a predefined list (e.g., HOLE, CORE, LIQ) |
| GC3 | SAMPLE | x_offset | Offset (m): top offset of sample from top of parent sample, expressed in meters. |
| GC3 | SAMPLE | x_offset_cm | Offset (cm): top offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset, converted to cm) |
| GC3 | SAMPLE | x_bottom_offset_cm | Bottom offset (cm): bottom offset of sample from top of parent sample, expressed in centimeters. This is a calculated field (offset + length, converted to cm) |
| GC3 | SAMPLE | x_diameter | Diameter (cm): diameter of sample, usually applied only to CORE, SECT, SHLF, and WRND samples; however this field is null on both Exp. 390 and 393, so it is no longer populated by Sample Master |
| GC3 | SAMPLE | x_orig_len | Original length (m): field for the original length of a sample; not always (or reliably) populated |
| GC3 | SAMPLE | x_length | Length (m): field for the length of a sample [as entered upon creation] |
| GC3 | SAMPLE | x_length_cm | Length (cm): field for the length of a sample. This is a calculated field (length, converted to cm). |
| GC3 | SAMPLE | status | Status: single-character code for the current status of a sample (e.g., active, canceled) |
| GC3 | SAMPLE | old_status | Old status: single-character code for the previous status of a sample; used by the LIME program to restore a canceled sample |
| GC3 | SAMPLE | original_sample | Original sample: field tying a sample below the CORE level to its parent HOLE sample |
| GC3 | SAMPLE | parent_sample | Parent sample: the sample from which this sample was taken (e.g., for PWDR samples, this might be a SHLF or possibly another PWDR) |
| GC3 | SAMPLE | standard | Standard: T/F field to differentiate between samples (standard=F) and QAQC standards (standard=T) |
| GC3 | SAMPLE | login_by | Login by: username of account used to create the sample (can be the LIMS itself [e.g., SHLFs created when a SECT is created]) |
| GC3 | SAMPLE | login_date | Login date: creation date of the sample |
| GC3 | SAMPLE | legacy | Legacy flag: T/F indicator for when a sample is from a previous expedition and is locked/uneditable on this expedition |
| GC3 | TEST | test changed_on | TEST changed on: date/time stamp for a change to a test record. |
| GC3 | TEST | test status | TEST status: single-character code for the current status of a test (e.g., active, in process, canceled) |
| GC3 | TEST | test old_status | TEST old status: single-character code for the previous status of a test; used by the LIME program to restore a canceled test |
| GC3 | TEST | test test_number | TEST test number: automatically generated database identifier for a test record. This is the primary key of the TEST table. |
| GC3 | TEST | test date_received | TEST date received: date/time stamp for the creation of the test record. |
| GC3 | TEST | test instrument | TEST instrument [instrument group]: field that describes the instrument group (most often this applies to loggers with multiple sensors); often obscure (e.g., user_input) |
| GC3 | TEST | test analysis | TEST analysis: analysis code associated with this test (foreign key to the ANALYSIS table) |
| GC3 | TEST | test x_project | TEST project: similar in scope to the expedition number, the difference being that the project is the current cruise, whereas expedition could refer to material/results obtained on previous cruises |
| GC3 | TEST | test sample_number | TEST sample number: the sample_number of the sample to which this test record is attached; a foreign key to the SAMPLE table |
| GC3 | CALCULATED | Top depth CSF-A (m) | Top depth CSF-A (m): position of observation expressed relative to the top of the hole. |
| GC3 | CALCULATED | Bottom depth CSF-A (m) | Bottom depth CSF-A (m): position of observation expressed relative to the top of the hole. |
| GC3 | CALCULATED | Top depth CSF-B (m) | Top depth [other] (m): position of observation expressed relative to the top of the hole. The location is presented in a scale selected by the science party or the report user. |
| GC3 | CALCULATED | Bottom depth CSF-B (m) | Bottom depth [other] (m): position of observation expressed relative to the top of the hole. The location is presented in a scale selected by the science party or the report user. |
| GC3 | RESULT | data_asman_id | RESULT data ASMAN_ID: serial number of the ASMAN link for the data file (binary format) |
| GC3 | RESULT | data_filename | RESULT data filename: file name of the data file (binary format) |
| GC3 | RESULT | ethane (ppmv) | RESULT ethane (ppmv): ethane (C2H6, also shown as C2) concentration of the headspace or void space |
| GC3 | RESULT | ethene (ppmv) | RESULT ethene (ppmv): ethene (C2H4, also shown as C2=) concentration of the headspace or void space |
| GC3 | RESULT | methane (ppmv) | RESULT methane (ppmv): methane (CH4, also shown as C1) concentration of the headspace or void space |
| GC3 | RESULT | method_asman_id | RESULT method ASMAN_ID: serial number of the ASMAN link for the method file (binary format) |
| GC3 | RESULT | method_filename | RESULT method filename: file name of the method file (binary format) |
| GC3 | RESULT | propane (ppmv) | RESULT propane (ppmv): propane (C3H8, also shown as C3) concentration of the headspace or void space |
| GC3 | RESULT | propene (ppmv) | RESULT propene (ppmv): propene (C3H6, also shown as C3=) concentration of the headspace or void space |
| GC3 | RESULT | run_test | RESULT run test: number of the run, not always populated |
| GC3 | RESULT | ssup_asman_id | RESULT spreadsheet uploader ASMAN_ID: serial number of the ASMAN link for the spreadsheet uploader file |
| GC3 | RESULT | ssup_filename | RESULT spreadsheet uploader filename: file name for the spreadsheet uploader file |
| GC3 | RESULT | c1_c2_gc3 | RESULT C1/C2 ratio (unitless): ratio of the C1 (methane) peak to the total C2 (ethane + ethene) peak |
| GC3 | RESULT | c1_heavy | RESULT C1/heavy ratio (unitless): ratio of the C1 (methane) peak to the total of all heavier hydrocarbon peaks |
| GC3 | SAMPLE | sample description | SAMPLE comment: contents of the SAMPLE.description field, usually shown on reports as "Sample comments" |
| GC3 | TEST | test test_comment | TEST comment: contents of the TEST.comment field, usually shown on reports as "Test comments" |
| GC3 | RESULT | result comments | RESULT comment: contents of a result parameter with name = "comment," usually shown on reports as "Result comments" |
Archive Version
NGA User Guide: 29th September 2022