OLD Chemistry Laboratory Notebook
OBSOLETE NOTEBOOK. DO NOT UPDATE. USE THE NEW CHEMISTRY LABORATORY NOTEBOOK.
Issues
Software Issues
Instructions/Rules:
- Issues reported appear here and on All Reported Software Issues page, which serves as an archive of all software issues.
- If you edit a Description, add your name, what you changed and the date.
- Once an issue has been resolved, change its Status to "Verified and Closed" to remove the issue from the Notebook. All issues are archived in All Reported Software Issues.
- Only developers and only technicians can add notes to their respective Notes columns.
Ongoing Issues
- PMing the TOC analyzer for Guaymas. The EFC Blank will need to be replaced in x385 portcall and the instrument will need to be calibrated then. (See TOC section).
- CHNS check standards results of Nitrogen drift a lot after running a few samples (0.13-0.14 or 0.25-0.26 versus the standard 0.18). After replacing the column, the problem still existed. We suspect that the usage of Vanadium Pentoxide changes the concentration of Nitrogen. We probably should not use it since we don't need sulfur data during this expedition. I ran a sequence of check standards with and without adding Vanadium Pentoxide. We also dried the standard sediments in the oven over 6 hours getting rid of all the moisture. Results from a variety of treatments indicate that adding the Vanadium Pentoxide will increase the Nitrogen, but drying standard sample won't make a major difference. I don't know why that happened because Vanadium Pentoxide should be only V and O, no N. I also suggest that we should weigh a fixed amount of Vanadium Pentoxide mixing with each samples if necessary, and that could maybe make the drifts between check standards showing up in a lower value. Any idea or suggestions are appreciated. 383_check stad run results.xltx
- Replumb the existing NGA-1 sample inlet to be compatible with a luerlok injection
OLD Chemistry Laboratory Notebook : CHNS TCD detector baseline show sporadic fluctuations on the order of ~8 uV, whereas before the random noise was on the order of ~1-2 uV. In contact with vendor. Changed the sensitivity of the software's auto-integration feature to ignore signal changes below ~10 uV to temporarily solve the issue.
- Revise chemical disposal procedures for all analyses.
Current Tasks
- Update the excel file "NFPA lab chemical cabinet inventory" with current chemical cabinet contents. Include a list of MBIO dry chemicals and their NFPA classification. Waiting on the storage bins to arrive for the new chemical fridge. We will organize and catalogue everything then.
- Update the List of Shipboard Rock and Sediment Standards with standards purchased over the past year
- Compile limit of detection for each instrument.
- Adjust the AIDR template to be compatible with Macs.
- Follow Metrohm's cleaning procedure of pH probes using thiourea reagent (Metrohm procedure: treat electrode with freshly prepared 7% thiourea solution in c(HCl) = 0.1 mol/l)
- Test the used anions and cations chromatographic columns used on the IC. There are several in the drawers beneath the instrument that have been exchanged on the fly and need to be thoroughly tested to determine if they are faulty. This may take several days to complete.
Expeditions
X387P
Spill-X for formaldehyde spills was added to both spill control kits in the chem lab. The kits previously only contained acid, caustic and solvent spill treatment. Due to space limitations the bottles had to be turned sideways. Clear labels were added onto the visible side of the bottles.
X378T
A shortcut was placed on desktop for the new and improved Remote Gas Monitoring application. It works very well and is a useful tool for checking the TBULK helium and argon pressures.
Scientists on X385 had had questions about the different looking Rhizon samplers. On X378T an inquiry was sent to Rhizosphere about the issue, and it turns out that they changed the type of glue they use for adhering the filter to the tubing. They also changed the type of tubing they use to one with a smaller carbon footprint. As long as we do not have different lots of Rhizons out at the same time, there should not be an issue. We had the Rhizon samplers all mixed in the drawer, but they are now separated, bagged and sorted by lot number in order to avoid any opportunity of having different looking Rhizons out at the same time. Rhizosphere also confirms that the lot number corresponds to the year of manufacture. 09=2009, 11=2011 and so on. We have Rhizons with lot numbers 09, 11, 13, 14 and 15. Use lot 09 and 11 first. These are the ones with the "blue glue". Rhizons do not have an expiration date. According to the Rhizosphere representative, as long as they are stored correctly, they should not be deteriorating.
X385T
Sample Master: A new label "CHEM small" was created based on "chem ICP". The label "chem ICP" was not touched, and both labels will continue to exist. The only difference between "chem ICP" and "CHEM small" is that none of the lines in CHEM small wrap, which makes this label practical for clearly displaying all the information necessary for IW aliquots.
Installed a rack in the gas standard cabinet to prevent bottle from spilling through the door during rough weather. The rack is moveable. Use a 17mm wrench to loosen the nut of the foot on the right-hand side to adjust the level.
Revamped the Chemlab's Spreadsheet Uploader Excel file. A copy is located in the Additional Resources section of this page, and another is on the Chem Tech Desktop.
X379T
Organic geochemist Becky Robinson advised us to use cut-off transfer pipettes to extend the syringe filter all the way through the ampule neck in order to avoid ending up with water droplets in the neck. Be careful not to let the tip sit in the water while filling the ampule, as this might leave droplets on the outside of the tip. Use caution on the way out not to touch the ampule neck with the tip. This could also leave behind a droplet.
X383
A couple of the squeezers had the titanium plate get wedged stuck in the sleeve. Both units were handed off to ETs to smooth out edges and surfaces.
Changed dispenser used for the dilution solution with the chloride titrator. Did some cleaning on the previous dispenser. Movement on that dispenser is smoother now.
X382
Rhizon sampling on U1538B 1H, 0 to 8.5 mbsf. Every 20 cm for the first 3 m, then every 50 cm.
New racks have been designed to hold Ar and He gas bottles in the pallet stores. This will enable techs to align the bottle valves to properly connect the gas manifold. The racks should be shipped in the near future.
Rhizon sampling on U1537B 1H, 0 to 7.4 mbsf. Every 20 cm for the first 3 m, then every 50 cm.
- EM : WinDAQ hardware screw terminal for argon AI+ (green wire) was loose. Voltage readings for argon acceptable.
- Helium and argon pressure readings from Gas Monitoring webpage different than shown on gauge.
- argon difference is ~ 50 psi (lower on webpage)
- helium difference is ~ 100 psi (lower on webpage)
Rhizon sampling on U1536D 1H. Sampling canceled due to a shattered liner. Attempting again at U1537.
MCS replaced old lab monitors with new DELL monitors.
HF digestions for palynology. Waste was neutralized in 1.5 L polyethylene bottles with calcite sand then transferred to a 20 L carboy for storage in the RADVAN. All handling was performed in a fume hood.
Additional Resources
Chemical Storage
Chemical Storage Guidelines.pdf
Incompatible chemical hazard groups
Plastic Chemical and Condition Compatibility Chart.pdf
Resin Storage and Compatibility.pdf
Gas Safety
ScottGas Design and Safety.pdf
Rhizon Techniques
Comparison_of_Rhizon_Sampling_and_Whole_Round_Squeezing.pdf
Chemistry Technician
SpreadsheetUploaderFormats_REVAMPED.xlsx
Carver Presses
Carver 12 & 25 Ton Hand Jack Manual
Carver Press Manual (Older manual)
N2 Oxygen Analyzer
Gas monitoring software
Argon/helium manifold pressure monitoring
Monitoring oxygen concentration in the nitrogen gas
Pipetting Guides
Eppendorf Pipettes Standard Operating Procedures
ThermoFisher Good Pipetting Guide.pdf
Coding
Visual Basic for Applications (VBA)
Excel 2013 Developer Documentation.chm
Power Query
Power Query M Formula Language Specification (February 2019).pdf
PowerQuery M Language Function Reference.pdf
Types in the Power Query M formula language.pdf
Chemistry Books and References
Quantitative_Chemical_Analysis_Daniel_C._Harris_(2015).pdf
Skoog,_D.A_(2013)_Fundamentals_of_Analytical_Chemistry.pdf
Otto,_M._(2017)_Chemometrics_Statistics_and_Computer_Application_in_Analytical_Chemistry.pdf
Ham_and_MaHam_(2015)_Analytical_Chemistry__A_Chemist_and_Laboratory_Technician's_Toolkit.pdf
Basic Chemistry Lab References
Basic Lab Skills Titrations Handbook.pdf
Basic Lab Skills UV-Vis Handbook.pdf
Theory and Instrumentation Of GC Columns.pdf
Theory and Instrumentation Of GC Introduction.pdf
Metrohm Basics of Potentiometry.pdf